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SlicerDMRI
Allows diffusion of imaging research in a clinical oncology setting and provides tools for end-to-end diffusion image analysis as well as interoperation with clinical imaging systems. SlicerDMRI is a suite of open-source software tools for diffusion magnetic resonance imaging (dMRI) research. The software is built upon and integrated with 3D Slicer, an NIH-supported open-source platform for medical image computing. SlicerDMRI is used for both neuroscience research and cancer imaging research.
Dipy / Diffusion Imaging in Python
Allows to study diffusion Magnetic Resonance Imaging (MRI) data. Dipy is a program allowing users to share their code and experiments. One of its objectives is to provide transparent implementations for all the different steps of the dMRI analysis with a uniform programming interface. It implements two interfaces for probabilistic Markov fiber tracking: (1) it allows the user to provide the distribution evaluated on a discrete set of possible tracking directions, and (2) it accommodates tracking methods where the fiber orientation distribution function (fODF) cannot be easily computed.
mrpipe
A “profilometry” framework for the multimetric analysis of white matter tracts. Mrpipe is a statistical framework that combine a multivariate analysis of covariance (MANCOVA) and a linear discriminant analysis (LDA) both accounting for age and gender, with multiple comparison corrections. This methodology can not only combine tract profile analyses in a single statistical model but can also take into account covariates such as age and gender which are of particular importance in most clinical investigations. This project is still a skeleton, the tool is not ready for use.
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