Image5D statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Image5D
info

Tool usage distribution map

This map represents all the scientific publications referring to Image5D per scientific context
info info

Associated diseases

This word cloud represents Image5D usage per disease context
info

Popular tool citations

chevron_left 3D image visualization Image visualization chevron_right
Want to access the full stats & trends on this tool?

Protocols

Image5D specifications

Information


Unique identifier OMICS_25926
Name Image5D
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Programming languages Java
Computer skills Medium
Version 1.1.6
Stability Stable
Requirements
ImageJ
Maintained Yes

Download


download.png

Versioning


No version available

Maintainer


  • person_outline Joachim Walter

Additional information


http://imagejdocu.tudor.lu/lib/exe/fetch.php?media=:plugin:3d:image5d:syncwindows-image5d-proceedings-paper-2006.pdf http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:image5d:start

Image5D citations

 (13)
call_split

Organization of olfactory centres in the malaria mosquito Anopheles gambiae

2016
Nat Commun
PMCID: 5063964
PMID: 27694947
DOI: 10.1038/ncomms13010
call_split See protocol

[…] ftware and manually inspected as to the overlap of Orco and CD8 channels.To quantify Orco (red) and mCD8-GFP (blue) co-staining with GFP fluorescence (green) in the larvae (), we used ImageJ with the Image5D plugin and Zen Zeiss software to mark and count cells in each of the three fluorescence channels.To quantify the overlap of Orco staining (red) and endogenous GFP fluorescence (green) in the c […]

call_split

aPKC regulates apical localization of Lgl to restrict elongation of microridges in developing zebrafish epidermis

2016
Nat Commun
PMCID: 4895443
PMID: 27249668
DOI: 10.1038/ncomms11643
call_split See protocol

[…] , , , , , , . Zeiss LSM 710 was used for capturing movies with higher temporal resolution using acquisition speed of two frames per minute and played at a rate of 6 frames per second for , , , . The Image5D plug-in from ImageJ was used for image processing and analysis of live movies.Imaging conditions were kept uniform across most of the experiments. Occasionally, PMT gains were slightly re-cali […]

library_books

Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments

2016
Mol Cell
PMCID: 4747903
PMID: 26833089
DOI: 10.1016/j.molcel.2016.01.001

[…] FISH was performed as described previously and detailed in the . ImageJ (Image5D plugin) software was used to score touching (no unstained pixel in between FISH signals) and nontouching (with unstained pixel(s) in between) alleles. […]

call_split

Quantitative framework for ordered degradation of APC/C substrates

2015
BMC Biol
PMCID: 4647693
PMID: 26573515
DOI: 10.1186/s12915-015-0205-6
call_split See protocol

[…] To quantify GFP intensity at each time point, we first used ImageJ (http://imagej.nih.gov/ij/) [] and its plugin Image5D (http://rsb.info.nih.gov/ij/plugins/image5d.html) to average across each z-stack and flatten it to 2D. GFP intensity was then quantified using MATLAB (The MathWorks Inc.) code previously devel […]

call_split

Multiple mechanisms determine the order of APC/C substrate degradation in mitosis

2014
PMCID: 4195823
PMID: 25287299
DOI: 10.1083/jcb.201402041
call_split See protocol

[…] To quantify GFP intensity at each time point, we first used ImageJ () and its plugin Image5D (http://rsb.info.nih.gov/ij/plugins/image5d.html) to average across each z stack and flatten it to 2D. GFP intensity was then quantified using MATLAB (The MathWorks, Inc.) code previously deve […]

library_books

Intravital imaging of hair cell development and regeneration in the zebrafish

2013
Front Neuroanat
PMCID: 3795300
PMID: 24130521
DOI: 10.3389/fnana.2013.00033

[…] Open the TIFF series in ImageJ/Fiji. Convert stack to Image5D using the Image5D Plugin. When requested use “Z” for 3rd dimension and “Time” for 4th dimension. Fill in the details of the time lapse according to your log book. Project the Z-stack to a sing […]


Want to access the full list of citations?

Image5D reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Image5D