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ImageMagick specifications


Unique identifier OMICS_05539
Name ImageMagick
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes




No version available

ImageMagick citations


Fast and simple tool for the quantification of biofilm embedded cells sub populations from fluorescent microscopic images

PLoS One
PMCID: 5929543
PMID: 29715298
DOI: 10.1371/journal.pone.0193267

[…] imple and standard image preparation procedure that is straightforward and thus can be applied consecutively to a series of images using many commercial or free image processing software tools (e.g., ImageMagick, Gimp etc.), we do not focus further on this issue. However, often significant image preprocessing leads to other problems, such as the increased level of the background noise that is enha […]


Dark zone of the Greenland Ice Sheet controlled by distributed biologically active impurities

Nat Commun
PMCID: 5852041
PMID: 29540720
DOI: 10.1038/s41467-018-03353-2
call_split See protocol

[…] high as 17.6% at the corners of some images. The correction mask was calculated from the mean vignette of all images acquired at nadir during the survey period. Barrel distortion was corrected using ImageMagick (, which utilized the coefficients stored in the image’s ancillary metadata also known as exchangeable image file format data.We then corrected the images for c […]


The influence of caging, bedding, and diet on the composition of the microbiota in different regions of the mouse gut

Sci Rep
PMCID: 5840362
PMID: 29511208
DOI: 10.1038/s41598-018-21986-7
call_split See protocol

[…] nerated using unweighted UniFrac distances and the Qiime script Frames of data for animation were created using the R package rgl ( ImageMagick ( was used to create the animation. […]


Automated monitoring of behavior reveals bursty interaction patterns and rapid spreading dynamics in honeybee social networks

Proc Natl Acad Sci U S A
PMCID: 5816157
PMID: 29378954
DOI: 10.1073/pnas.1713568115
call_split See protocol

[…] ware that builds on the software library ZXing 1.47 (), which we modified to work with bCodes. Images of barcoded bees were acquired with StreamPix 5 (NorPix). Images were resized and sharpened using ImageMagick, version 6.7.8–9 (ImageMagick Studio LLC). bCodes were detected with custom software that builds on the modified version of ZXing mentioned above. Trophallaxis was detected with custom sof […]


Stochastic tuning of gene expression enables cellular adaptation in the absence of pre existing regulatory circuitry

PMCID: 5919758
PMID: 29620524
DOI: 10.7554/eLife.31867.052

[…] taken once every 30 min for 24 hr on a Nikon Eclipse Ti microscope using a 20x objective.For comparative visualization purposes (), the DIC or brightfield channel of each image was rescaled using the ImageMagick ‘normalize’ operator, and the fluorescence channels were normalized by subtracting the minimum pixel value within a given field of view, and then subjecting the remaining data to a median […]


A three dimensional stereotaxic atlas of the gray short tailed opossum (Monodelphis domestica) brain

PMCID: 5884921
PMID: 29214509
DOI: 10.1007/s00429-017-1540-x

[…] pings using the Symmetric Normalisation algorithm (SyN, Avants et al. ) driven by one or more similarity terms. In addition, the InsightToolkit (ITK, Schroeder ,, Convert3d ( and ImageMagick ( software suites were used to accomplish auxiliary image processing tasks, such as conversion between formats, various kinds of filtering, resampling, cropping […]


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