ImaGene statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ImaGene

Tool usage distribution map

This map represents all the scientific publications referring to ImaGene per scientific context
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ImaGene specifications


Unique identifier OMICS_00841
Name ImaGene
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux, Mac OS, Windows
License Commercial
Computer skills Medium
Version 9.0
Stability Stable
Maintained Yes


No version available

Additional information

Access available upon request.

ImaGene citations


Monocyte related biomarkers of rheumatoid arthritis development in undifferentiated arthritis patients – a pilot study

PMCID: 5911652
PMID: 29686437
DOI: 10.5114/reum.2018.74742
call_split See protocol

[…] ins capture probes targeting all microRNAs for human registered in the miRBASE 18.0., and scanned using Microarray Scanner System (Agilent Technologies, USA). The image analysis was carried out using ImaGene 9 Software (Exiqon). The quantified signals were background corrected (Normexp with offset value 10) and normalized using the global Lowess (Locally Weighted Scatterplot Smoothing) regression […]


NRF2 regulates endothelial glycolysis and proliferation with miR 93 and mediates the effects of oxidized phospholipids on endothelial activation

Nucleic Acids Res
PMCID: 5815049
PMID: 29161413
DOI: 10.1093/nar/gkx1155

[…] cent dyes. The miRCURY™ LNA array microarray slides were scanned using the Agilent G2565BA Microarray Scanner System (Agilent Technologies, Inc., USA) and the image analysis was carried out using the ImaGene 8.0 software (BioDiscovery, Inc., USA). The quantified signals were background corrected (Normexp with offset value 10 () and normalized using the global Lowess (LOcally WEighted Scatterplot S […]


MicroRNA expression patterns in canine mammary cancer show significant differences between metastatic and non metastatic tumours

BMC Cancer
PMCID: 5678797
PMID: 29115935
DOI: 10.1186/s12885-017-3751-1
call_split See protocol

[…] anned and stored in an ozone free environment (ozone level below 2.0 ppb). Scanning was carried out using Agilent G2565BA Microarray Scanner (Agilent Technologies). Image analysis was performed using ImaGene 9.0 software (BioDiscovery, USA). Quantified signals were normalized using quantile normalization method.Both unsupervised and supervised analyses of data were performed. Unsupervised analysis […]


Inhibition of miR 142 5P ameliorates disease in mouse models of experimental colitis

PLoS One
PMCID: 5653202
PMID: 29059189
DOI: 10.1371/journal.pone.0185097
call_split See protocol

[…] H, Bergisch Gladbach, Germany) at Miltenyi. Experimental and control samples (miRXplore universal reference, UR) were labeled with Hy5 and Hy3 respectively. Signal intensities were obtained using the ImaGene software (Biodiscovery) and normalized mean Hy5/Hy3 ratios were calculated using the PIQOR analyzer. The normalized Hy5/Hy3 ratios were log2-transformed. A systematic shift towards positive lo […]


Physiological and transcriptome analysis of heteromorphic leaves and hydrophilic roots in response to soil drying in desert Populus euphratica

Sci Rep
PMCID: 5610244
PMID: 28939837
DOI: 10.1038/s41598-017-12091-2

[…] ure was followed according to the chip manufacturer instructions (Shanghai Biochip Co., Ltd.).Microarrays were scanned using an Axon microarray scanner (Angilent technology) and analyzed by split-tif Imagene software. Background fluorescence was subtracted from the value of each spot on the array. Normalization of the signal intensities was carried out according to Deyholos et al.. Transcript regu […]


Transcriptome profiling of antiviral immune and dietary fatty acid dependent responses of Atlantic salmon macrophage like cells

BMC Genomics
PMCID: 5591513
PMID: 28886690
DOI: 10.1186/s12864-017-4099-2

[…] he Cy3 and Cy5 channel photomultiplier tube (PMT) settings were adjusted to balance the fluorescence signal. The raw data were saved as TIFF images, and the signal intensity data were extracted using Imagene 9.0 (BioDiscovery, El Segundo, California, USA). Using R and the Bioconductor package marray, the low-quality or flagged spots on the microarray were discarded from datasets, followed by log2- […]

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