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Imaris specifications


Unique identifier OMICS_18621
Name Imaris
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


Imaris citations


A Mechanism of Unidirectional Transformation, Leading to Antibiotic Resistance, Occurs within Nasopharyngeal Pneumococcal Biofilm Consortia

PMCID: 5954218
PMID: 29764945
DOI: 10.1128/mBio.00561-18
call_split See protocol

[…] , Thermo Fisher Scientific, Grand Island, NY). Confocal images were obtained using an Olympus FV1000 confocal microscope and were analyzed with ImageJ version 1.49k (National Institutes of Health) or Imaris software (Bitplane, South Windsor, CT). […]


CARF enrichment promotes epithelial–mesenchymal transition via Wnt/β catenin signaling: its clinical relevance and potential as a therapeutic target

PMCID: 5945778
PMID: 29748568
DOI: 10.1038/s41389-018-0048-4

[…] oplan 2 microscope (with a Zeiss AxioCam HRc camera) and confocal laser scanning microscope (LSM510, Carl Zeiss). To resolve the subcellular localization of protein, the images were analyzed with the Imaris (Bitplane) software. […]


Mammalian EAK 7 activates alternative mTOR signaling to regulate cell proliferation and migration

Sci Adv
PMCID: 5942914
PMID: 29750193
DOI: 10.1126/sciadv.aao5838

[…] ine averaging, appropriate voltage, and power settings optimized per antibody. No modification was done, except image sizing reduction for figure preparation. Quantitative analyses were completed via Imaris software for confocal images with calculation of colocalization as percentages. Identical threshold settings captured images across three to five individual fields (10 to 15 cells) per conditio […]


Morphoregulatory functions of the RNA binding motif protein 3 in cell spreading, polarity and migration

Sci Rep
PMCID: 5943363
PMID: 29743635
DOI: 10.1038/s41598-018-25668-2
call_split See protocol

[…] 3 antibody, rhodamine-conjugated phalloidin, or combinations thereof. Single optical sections or Z-series were obtained using a Zeiss 710 laser-scanning confocal microscope. Images were analyzed with IMARIS imaging software (Bitplane). Primary human myoblasts were grown in Hams F-10 that contained 20% FBS, penicillin and streptomycin at 37 °C in a humidified 5% CO2–95% air atmosphere incubator. Di […]


A role for SOX9 in post transcriptional processes: insights from the amphibian oocyte

Sci Rep
PMCID: 5940923
PMID: 29740094
DOI: 10.1038/s41598-018-25356-1

[…] rn of granules immunostained with either SOX9 or CELF1 antibodies, which corresponded to packed RNP transcripts (Fig. ). The average size of these particles as determined using the spot module of the IMARIS software (Bitplane, version 8.4) was similar for those associated with SOX9 (0.192 µm, standard deviation: 0.035) or CELF1 (0. 196 µm, standard deviation: 0.038). The Pearson’s correlation coef […]


Basal mitophagy is widespread in Drosophila but minimally affected by loss of Pink1 or parkin

PMCID: 5940313
PMID: 29500189
DOI: 10.1083/jcb.201801044
call_split See protocol

[…] focal images were processed using Fiji (ImageJ) software (RRID:SCR_002285) for figure presentation. For quantification of mitolysosomes, spinning disk microscopy–generated images were processed using Imaris (version 9.0.2) analysis software (BitPlane; RRID:SCR_007370) to identify and count individual red-only puncta. The GFP and mCherry signals were adjusted to reduce background noise and retain o […]


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