ImarisTrack protocols

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chevron_left 3D image analysis Colocalization analysis Particle tracking Colocalization analysis 3D image surfacing chevron_right
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ImarisTrack specifications

Information


Unique identifier OMICS_06586
Name ImarisTrack
Software type Toolkit/Suite
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Mac OS, Windows
License Commercial
Computer skills Medium
Stability Stable
Maintained Yes

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ImarisTrack in pipelines

 (3)
2017
PMCID: 5347013
PMID: 28287155
DOI: 10.1038/srep44357

[…] with the lightsheet micoscopy (5× objective) at 37 °c with a z-step size of 1 μm and time interval of around 30 seconds. nk cells were tracked and analyzed using imaris 8.1.2 (containing imaris, imaristrack, imarismeasurementpro, imarisvantage; bitplane ag, software available at http://bitplane.com)., to determine the concentration of h2o2 generated during the killing process, we carried […]

2017
PMCID: 5473868
PMID: 28623274
DOI: 10.1038/s41598-017-03483-5

[…] for each z-plane. three-dimensional images of nuclei were recaptured by imaris software (bitplane, zurich, switzerland), and time-dependent replacement of the laco spots was tracked by means of imaristrack. interphase nuclei were distinguished by determining the time course between the last and next cell divisions and the disappearance of gfp spots during mitosis., to visualise […]

2016
PMCID: 4945005
PMID: 27415420
DOI: 10.1371/journal.pbio.1002515

[…] alexafluor 633-labeled meca79 antibody was injected iv in order to label hevs. each image sequence lasted for 30 min. acquired 3-d time-lapse images were tracked using imaris software with spot and imaristrack function. average single cell speeds were calculated from 3-d coordinates of tracked cells using matlab []. t cells attached to hevs were not included in the analysis. arrest coefficient, […]


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ImarisTrack in publications

 (8)
PMCID: 5560673
PMID: 28817694
DOI: 10.1371/journal.pone.0183336

[…] to monitor the cell motility on the mscs-loaded microcarriers. today, few systems are available for tracking cells/particles in 3d starting from a time-lapse dataset of z-stacks of images []. the imaristrack module (http://www.bitplane.com/imaris/imaristrack) of imaris (bitplabe, zurich, switzerland) is the most complete solution in the field and is used for a wide range of applications, […]

PMCID: 5347013
PMID: 28287155
DOI: 10.1038/srep44357

[…] with the lightsheet micoscopy (5× objective) at 37 °c with a z-step size of 1 μm and time interval of around 30 seconds. nk cells were tracked and analyzed using imaris 8.1.2 (containing imaris, imaristrack, imarismeasurementpro, imarisvantage; bitplane ag, software available at http://bitplane.com)., to determine the concentration of h2o2 generated during the killing process, we carried […]

PMCID: 4945005
PMID: 27415420
DOI: 10.1371/journal.pbio.1002515

[…] alexafluor 633-labeled meca79 antibody was injected iv in order to label hevs. each image sequence lasted for 30 min. acquired 3-d time-lapse images were tracked using imaris software with spot and imaristrack function. average single cell speeds were calculated from 3-d coordinates of tracked cells using matlab []. t cells attached to hevs were not included in the analysis. arrest coefficient, […]

PMCID: 4468769
PMID: 26109952
DOI: 10.4103/1673-5374.156979

[…] points of dcx-positive cells in the granule cell layer of the hippocampal dentate gyrus were traced using filament tracer software (bitplane inc., south windsor, ct, usa) and then analyzed with imaristrack software (bitplane inc.). a qualified neuron for analysis displayed a comparatively independent dendritic tree with at least tertiary branches. tracings were analyzed by sholl analysis […]

PMCID: 3906025
PMID: 24489670
DOI: 10.1371/journal.pone.0085763

[…] nd filter (nd 8) installed, and with a camera em gain setting of 10., datasets were exported from nis elements and read directly in imaris ×64 v. 7.6.1 (bitplane ag, zurich, switzerland). using the imaristrack module, parasites were tracked within a region of interest (roi) that was cropped 1 µm from each of the original x, y and z dimensions to avoid tracking artifacts associated with objects […]


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