ImiRP specifications

Information


Unique identifier OMICS_27657
Name ImiRP
Alternative name Illegitimate miRNA Predictor
Interface Web user interface
Restrictions to use None
Programming languages Javascript
Computer skills Basic
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Robert Chow

Information


Unique identifier OMICS_27657
Name ImiRP
Alternative name Illegitimate miRNA Predictor
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A DNA or RNA sequence and the location of predicted miRNA target sites to be mutated.
Operating system Unix/Linux
Programming languages Java
License Apache License version 2.0
Computer skills Advanced
Maintained Yes

Download


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Versioning


No version available

Maintainer


  • person_outline Robert Chow

Publication for Illegitimate miRNA Predictor

ImiRP citation

library_books

Interplay between TETs and microRNAs in the adult brain for memory formation

2018
Sci Rep
PMCID: 5786039
PMID: 29374200
DOI: 10.1038/s41598-018-19806-z

[…] sequences were amplified from mouse genomic DNA and cloned into pmirGLO Dual-Luciferase miRNA target expression vector (Promega). For miRNA seed mutagenesis of Tet3 3′UTR, mutations were predicted by ImiRP, a mutation generator program that enables selective disruption of miRNA target sites while ensuring predicted target sites for other miRNAs are not created. Tet3 3′UTR containing mutated seed s […]

ImiRP institution(s)
Department of Biology, University of Victoria, Victoria, BC, Canada; Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC, Canada
ImiRP funding source(s)
Supported by the Sharon Stewart Trust.

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