ImmuneDB specifications


Unique identifier OMICS_12746
Name ImmuneDB
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data ImmuneDB takes as input raw FASTA or FASTQ files with full or partial IGHV sequences, optionally pre-processed by pRESTO.
Output data A web interface to ImmuneDB is provided, allowing users to interactively explore data after analysis with the pipeline. Most data including raw sequences, metadata, mutation analysis, and clonal assignments can be easily downloaded in a variety of formats including FASTA, FASTQ, and CSV allowing further processing with external tools.
Operating system Unix/Linux
Programming languages Python
Database management system MySQL
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Uri Hershberg <>

Additional information

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ImmuneDB article

ImmuneDB institution(s)
School of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, PA, USA; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Department of Microbiology and Immunology, College of Medicine, Drexel University, Philadelphia, PA, USA
ImmuneDB funding source(s)
This work was supported by the National Institute of Allergy and Infectious Diseases of the National Institutes of Health under Award Number P01AI106697 and by NIH P30-CA016520.

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