ImmunediveRsity protocols

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ImmunediveRsity specifications

Information


Unique identifier OMICS_08094
Name ImmunediveRsity
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data RepSeq library raw reads
Output data Analysis results
Biological technology Illumina, Roche
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.8
Stability Stable
Requirements
Python, C
Maintained Yes

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Publication for ImmunediveRsity

ImmunediveRsity in pipeline

2015
PMCID: 4658769
PMID: 26608341
DOI: 10.1186/s13073-015-0239-y

[…] the sequencing was carried out in antisense, that is, from the b adapter. raw sequencing files were submitted to ncbi-sra: bioproject id: prjna301150; accessions: samn04240435-78., we have developed immunediversity [], a bioinformatics analysis platform based on the r language for the automated analysis of the structural diversity of the b-lymphocyte repertoire. this data processing platform […]


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ImmunediveRsity in publications

 (2)
PMCID: 4766701
PMID: 26917418
DOI: 10.1186/s13073-016-0276-1

[…] central value of 1200 au (12-fold increase relative to an mb cell), a minimal value of 300, and a maximal value of 10,000 au [] (additional file )., we have developed a software (pipeline) named immunediversity for the analysis of the repertoire sequencing (rep-seq) data []. immunediversity is written in r language [] and automates ig sequencing analysis from pre-processing, error correction […]

PMCID: 4658769
PMID: 26608341
DOI: 10.1186/s13073-015-0239-y

[…] igg vh amplicons derived from peripheral blood rna from pre-immune and 7¬†days post vaccination were subjected to 454-roche sequencing. full reconstruction of the sampled repertoires was done with immunediversity., the tiv induced a predominantly homotypic neutralizing serologic response, while the 09 miv induced a heterotypic neutralizing seroconversion in 17¬†% of the individuals. […]


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ImmunediveRsity institution(s)
Department of Immunology, Research Center for Infectious Diseases at the National Institute of Public Health (INSP-CISEI), Cuernavaca, Morelos, Mexico

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