ImmunediveRsity statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ImmunediveRsity
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Tool usage distribution map

This map represents all the scientific publications referring to ImmunediveRsity per scientific context
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Associated diseases

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Protocols

ImmunediveRsity specifications

Information


Unique identifier OMICS_08094
Name ImmunediveRsity
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data RepSeq library raw reads
Output data Analysis results
Biological technology Illumina, Roche
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.8
Stability Stable
Requirements
Python, C
Maintained Yes

Versioning


No version available

Documentation


Publication for ImmunediveRsity

ImmunediveRsity citations

 (3)
library_books

3D: diversity, dynamics, differential testing – a proposed pipeline for analysis of next generation sequencing T cell repertoire data

2017
BMC Bioinformatics
PMCID: 5327583
PMID: 28241742
DOI: 10.1186/s12859-017-1544-9

[…] ng and analysis of antigen receptor repertoire sequencing data at single-cell level by a relational database. Some of the tools, such as repgenHMM [], IMonitor [], IMEX/IMmunEXplorer [], Change-O [], ImmunediveRsity [], and VDJtools [] etc., could also measure repertoire diversity, but they only rely on one or two diversity indices, such as Shannon or Gini diversity. ImmunoSEQ Analyzer [] develope […]

call_split

Lower IgG somatic hypermutation rates during acute dengue virus infection is compatible with a germinal center independent B cell response

2016
Genome Med
PMCID: 4766701
PMID: 26917418
DOI: 10.1186/s13073-016-0276-1
call_split See protocol

[…] We have developed a software (pipeline) named ImmunediveRsity for the analysis of the repertoire sequencing (Rep-Seq) data []. ImmunediveRsity is written in R language [] and automates Ig sequencing analysis from pre-processing, error correction […]

library_books

Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

2015
Genome Med
PMCID: 4658769
PMID: 26608341
DOI: 10.1186/s13073-015-0239-y

[…] We have developed ImmunediveRsity [], a bioinformatics analysis platform based on the R language for the automated analysis of the structural diversity of the B-lymphocyte repertoire. This data processing platform begi […]


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ImmunediveRsity institution(s)
Department of Immunology, Research Center for Infectious Diseases at the National Institute of Public Health (INSP-CISEI), Cuernavaca, Morelos, Mexico

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