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IMmunEXplorer IMEX

A user-friendly tool for analyzing and visualizing IG and TR repertoires based on NGS data. IMEX offers several algorithms for analyzing the clonality and diversity on multiple levels such as V-(D)-J arrangement, CDR, and nucleotide sequences of the whole reads. Moreover, it also provides features for analyzing primer efficiency. IMEX includes various visualization possibilities such as pie charts, histograms, line charts, bubble charts, and heat maps.

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IMEX classification

IMEX specifications

Software type:
Restrictions to use:
Programming languages:
Net framework
Command line interface, Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:

IMEX distribution


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IMEX support


  • Susanne Schaller <>


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University of Applied Sciences Upper Austria, Hagenberg Campus, Bioinformatics Research Group, Softwarepark 13, Hagenberg, Austria; Red Cross Transfusion Service of Upper Austria, Linz, Austria; Ludwig Boltzmann Institute for Experimental and Clinical Traumatology, Vienna, Austria; Elisabethinen Hospital, Linz, Austria; Medical University of Vienna, Department of Nephrology, Vienna, Austria

Link to literature

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