A user-friendly tool for analyzing and visualizing IG and TR repertoires based on NGS data. IMEX offers several algorithms for analyzing the clonality and diversity on multiple levels such as V-(D)-J arrangement, CDR, and nucleotide sequences of the whole reads. Moreover, it also provides features for analyzing primer efficiency. IMEX includes various visualization possibilities such as pie charts, histograms, line charts, bubble charts, and heat maps.

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IMEX forum

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IMEX versioning

No versioning.

IMEX classification

IMEX specifications

Software type:
Framework
Restrictions to use:
None
Programming languages:
C#
Version:
ImmunExplorer version 1.0
Requirements:
Microsoft.NET framework 4.0
Interface:
Command line interface, Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Beta

IMEX support

Maintainer

Credits

Publications

Institution(s)

University of Applied Sciences Upper Austria, Hagenberg Campus, Bioinformatics Research Group, Softwarepark 13, Hagenberg 4232, Austria; Red Cross Transfusion Service of Upper Austria, Krankenhausstrasse 7, Linz 4020, Austria; Ludwig Boltzmann Institute for Experimental and Clinical Traumatology, Donaueschingenstrasse 13, Vienna 1200, Austria; Elisabethinen Hospital, Fadingerstrasse 1, Linz 4020, Austria; Medical University of Vienna, Department of Nephrology, Spitalgasse 23, Vienna 1090, Austria

Link to literature

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