A method to derive clonotype repertoires from next generation sequencing data with sophisticated routines for handling errors stemming from PCR and sequencing artefacts. The application can handle different kinds of input data originating from single- or paired-end sequencing in different configurations and is generic regarding the species and gene of interest.

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IMSEQ versioning

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IMSEQ classification

IMSEQ specifications

Software type:
Package
Restrictions to use:
None
Input format:
FASTA, FASTQ
Programming languages:
C++
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Input data:
Sequencing data
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 2.0
Version:
IMSEQ version 1.0.1

IMSEQ support

Maintainer

  • Leon Kuchenbecker <>

Credits

Publications

Institution(s)

Charité Universitätsmedizin Berlin, Berlin, Germany

Link to literature

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