A convenient web based application for analyzing next-generation sequencing results and reporting IGH gene rearrangements for both repertoire and clonality studies. IGGalaxy has two analysis options one using the built in igBLAST algorithm and the second using output from IMGT; in either case repertoire summaries for the B-cell populations tested are available. IGGalaxy supports multi-sample and multi-replicate input analysis for both igBLAST and IMGT/HIGHV-QUEST. IGGalaxy is built on top of the Galaxy framework (http://galaxyproject.org/) and is distributed as a virtual machine image.

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IGGalaxy classification

IGGalaxy specifications

Software type:
Module
Restrictions to use:
None
Programming languages:
Perl, Python, R
Stability:
Stable
Interface:
Web user interface
Biological technology:
Illumina, Roche
Computer skills:
Basic

Credits

Publications

Institution(s)

Department of Bioinformatics, Erasmus University Medical Center, Rotterdam, The Netherlands

Link to literature

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