Immunology software tools and databases

Recently, massive factory-scale experimentation coupled to literature mining has allowed numerous functional immunology resources to emerge.

Immunology applications

Most recent bioinformatics tools

Scaligner
Web

Scaligner

Analyzes antibody sequences. Scaligner allows users to store sequences in a…

Analyzes antibody sequences. Scaligner allows users to store sequences in a secure repository, identifies Complementary Determining Region (CDR) and numbers amino acids using Kabat and IMGT schemes.…

Phasemhc
Desktop

Phasemhc

Maps short reads to a reference sequence. Phasemhc combines de novo assemblies…

Maps short reads to a reference sequence. Phasemhc combines de novo assemblies with transmission information and read backed phasing. It was tested by simulating reads in an artificial trio with…

NERVE
Desktop

NERVE New Enhanced Reverse Vaccinology Environment

Predicts the best vaccine candidates (VCs) starting from the flat file proteome…

Predicts the best vaccine candidates (VCs) starting from the flat file proteome of a prokaryotic pathogen. NERVE is a fully automated reverse vaccinology (RV) system, developed to predict best VCs…

Vacceed
Desktop

Vacceed

Predicts worthy vaccine candidates from large volumes of superfluous,…

Predicts worthy vaccine candidates from large volumes of superfluous, disseminated and noisy data. Vacceed is the collective name for a framework of linked bioinformatics programs, Perl scripts, R…

Most popular analytical software and databases

Interferome
Dataset

Interferome

This database is an upgrade of the original database and contains type I, II…

This database is an upgrade of the original database and contains type I, II and III interferon (IFN) regulated genes, manually curated from publicly available microarray datasets.

ABCpred
Desktop

ABCpred

Predicts B cell epitope(s) in an antigen sequence, using artificial neural…

Predicts B cell epitope(s) in an antigen sequence, using artificial neural network. ABCpred is able to predict epitopes with 65.93% accuracy using recurrent neural network.

Curators for Immunology

Information

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