ImmunomeBase specifications


Unique identifier OMICS_04541
Name ImmunomeBase
Restrictions to use None
Maintained Yes

Publication for ImmunomeBase

ImmunomeBase citations


Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys

BMC Genomics
PMCID: 4174608
PMID: 25168586
DOI: 10.1186/1471-2164-15-738

[…] bacterial lysozyme in R. pedestris []. BMSB have twenty putative transcripts with homology to 66 of the 67 D. melanogaster lysozyme proteins in NR and 7 of the 7 D. melanogaster lysozyme proteins in ImmunomeBase [], suggesting that BMSB has a similar complement of lysozyme genes as D. melanogaster. This suggests that the presence of the bacterial lysozyme is not strictly related to the loss of th […]


Insights into the innate immunity of the Mediterranean mussel Mytilus galloprovincialis

BMC Genomics
PMCID: 3039611
PMID: 21269501
DOI: 10.1186/1471-2164-12-69

[…] We used 2,915 Gene Ontology (GO) sequences associated with UniProt Knowledgebase (UniProtKB) below the node GO:0002376-Immune system processes [] and 4,216 sequences downloaded from the multispecies ImmunomeBase [] to seek related mussel transcripts by tBLASTn similarity search (cut-off 1.0E-4). A working list of 1,233 keywords relating to mussels and innate immunity also supported the extraction […]

ImmunomeBase institution(s)
Bioinformatics Research Group, Institute of Medical Technology, University of Tampere, Finland

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