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ImmunoNodes

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Permits to build complex workflows. ImmunoNodes is integrated in KNIME that provides a way to predict Human Leukocyte Antigen (HLA) binding, HLA class I antigen processing, HLA genotyping, as well as epitope-based vaccine design including epitope-selection and string-of-beads assembly. It allows users to develop complex analysis workflows without the need of having mastered a programming language. The tool offers the possibility to diffuse the usage of state-of-the-art immuno-informatics methods.

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ImmunoNodes forum

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ImmunoNodes classification

ImmunoNodes specifications

Software type:
Framework/Library
Restrictions to use:
None
Programming languages:
Python
Computer skills:
Advanced
Requirements:
KNIME, Docker, GKN
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
BSD 3-clause “New” or “Revised” License
Stability:
Stable
Maintained:
Yes

ImmunoNodes distribution

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ImmunoNodes support

Maintainer

  • Benjamin Schubert <>

Credits

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Publications

Institution(s)

Center for Bioinformatics, University of Tübingen, Tübingen, Germany; Applied Bioinformatics, Dept. of Computer Science, Tübingen, Germany; Department of Cell Biology, Harvard Medical School, Harvard University, Boston, MA, USA; Quantitative Biology Center (QBiC), Tübingen, Germany; Faculty of Medicine, University of Tübingen, Tübingen, Germany; Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany

Funding source(s)

Supported by the European Union’s Horizon 2020 research and innovation program under grant agreement No. 633592 (APERIM) and by the Deutsche Forschungsgemeinschaft (SFB685/B1).

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.