IMOD statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool IMOD

Tool usage distribution map

This map represents all the scientific publications referring to IMOD per scientific context
info info

Associated diseases

This word cloud represents IMOD usage per disease context

Popular tool citations

chevron_left 3D image analysis 3D image visualization Image enhancement Image visualization 3D image analysis Image enhancement Image enhancement 3D image reconstruction 3D image analysis 3D image reconstruction 3D image visualization Image registration Serial block face imaging 3D reconstruction 3D image analysis Image modelization Image modelization 3D image reconstruction Image modelization Image visualization chevron_right
Want to access the full stats & trends on this tool?


IMOD specifications


Unique identifier OMICS_27358
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 4.9.6
Stability Stable
Maintained Yes


  • ETomo


No version available

Publication for IMOD

IMOD citations


Small GTPases and BAR domain proteins regulate branched actin polymerisation for clathrin and dynamin independent endocytosis

Nat Commun
PMCID: 5943408
PMID: 29743604
DOI: 10.1038/s41467-018-03955-w
call_split See protocol

[…] control and image acquisition was accomplished using the software SerialEM. Tilt series were later reconstructed using weighted back projection and fiducial markers (10 nm) into a single volume with IMOD. To examine areas with the greatest electron density in an unbiased manner, density-based thresholding was employed with the Isosurface render programme in IMOD as previously described for APEX/D […]


Anatomical Inputs From the Sensory and Value Structures to the Tail of the Rat Striatum

Front Neuroanat
PMCID: 5943565
PMID: 29773980
DOI: 10.3389/fnana.2018.00030
call_split See protocol

[…] acers (Figures , ), the outlines of the cortex, striatum and fluorescent signals of injected retrograde tracers were drawn through 400-μm interval brain slices, and the images were reconstructed with IMOD, a 3D rendering program (Boulder Laboratory, University of Colorado, Boulder, CO, USA). To count the labeled cells, we scanned at 200-μm intervals from three hemispheres (rat #2 right, left and r […]


Promotion of virus assembly and organization by the measles virus matrix protein

Nat Commun
PMCID: 5928126
PMID: 29712906
DOI: 10.1038/s41467-018-04058-2

[…] scripts ( and provided by Direct Electron. Tomograms were reconstructed from the aligned images and CTF corrected by phase flipping using the IMOD software package, . 3D volumes were segmented manually using the Amira software program (FEI Visualization Sciences Group, Hillsboro, OR).Linear density profiles were measured from the tomographi […]


Isolation of mitochondria from Saccharomyces cerevisiae using magnetic bead affinity purification

PLoS One
PMCID: 5919621
PMID: 29698455
DOI: 10.1371/journal.pone.0196632
call_split See protocol

[…] d mitochondria were imaged and included in subsequent analysis, and representative data were collected from both crude and bead-purified mitochondria. Tomograms were aligned using fiducial markers in IMOD version 4.9 [, ], followed by three-dimensional volume reconstruction of 3x-binned tilt series via a simultaneous iterative reconstruction technique (SIRT), using Tomo3D []. Volumes were subseque […]


The Origin, Dynamic Morphology, and PI4P Independent Formation of Encephalomyocarditis Virus Replication Organelles

PMCID: 5904412
PMID: 29666283
DOI: 10.1128/mBio.00420-18

[…] . Automated tilt series acquisition was performed using Xplore3D software (Thermo Fisher Scientific). Tilt series alignment and tomogram reconstruction by weighted back-projection were carried out in IMOD () (version 4.7.15). In the process, the gold fiducial markers were digitally erased to be eliminated from the final 3D reconstruction. To determine the sizes of ROs spanning multiple sections, t […]


Nanostructure, osteopontin, and mechanical properties of calcitic avian eggshell

Sci Adv
PMCID: 5930395
PMID: 29725615
DOI: 10.1126/sciadv.aar3219

[…] tilts and high tilts on the 80-nm-thick sections). The resulting images had pixel sizes of 0.19 nm. The images from the tilt series were aligned, filtered, and reconstructed into a tomogram using the IMOD software package (). The movies for the raw tilt series and reconstruction were carried out using IMOD, whereas the movies with 3D volume with solid and surface rendering were generated using UCS […]

Want to access the full list of citations?
IMOD institution(s)
Boulder Laboratory for 3D Electron Microscopy of Cells, Department of MCD Biology, University of Colorado, Boulder, CO, USA
IMOD funding source(s)
Supported by Grant RR00592 from the National Institutes of Health.

IMOD reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review IMOD