Imogene statistics

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Associated diseases

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Imogene specifications

Information


Unique identifier OMICS_12898
Name Imogene
Interface Web user interface
Restrictions to use None
Input data A coordinate file, a file containing a list of motif definitions.
Output format .txt
Programming languages C++, Python
License GNU General Public License version 3.0
Computer skills Basic
Version 1.0-253
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Vincent Hakim <>

Information


Unique identifier OMICS_12898
Name Imogene
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A coordinate file, a file containing a list of motif definitions.
Output format .txt
Operating system Unix/Linux
Programming languages C++, Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0-257
Stability Stable
Requirements
GNU Scientific, Corebio, weblogo, argparse
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Vincent Hakim <>

Publication for Imogene

Imogene in publication

PMCID: 4031048
PMID: 24852826
DOI: 10.1371/journal.pgen.1004386

[…] tested by electrophoretic mobility shift assay on the basis of their proximity to the mef3 myogenin consensus gaaacctga . the pwm (shown in and ) was generated by running the de novo motif finder imogene on small dna fragments (see ) that contained these binding sites. imogene used phylogeny to enrich mouse set of dna fragments with orthologs in 11 other mammalian sequenced genomes […]


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Imogene institution(s)
Developmental and Stem Cell Biology Department, Institut Pasteur, Paris, France; CNRS, URA2578, Paris, France; Laboratoire de Physique Statistique, CNRS, Ecole Normale Supérieure, Université P et M Curie, Université Paris-Diderot, France
Imogene funding source(s)
Centre National de la Recherche Scientifique; Ecole Normale Supérieure; Institut Pasteur; Agence Nationale pour la Recherche [ANR-08-BLAN-0235]

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