ImOSM statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ImOSM

Tool usage distribution map

This map represents all the scientific publications referring to ImOSM per scientific context
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ImOSM specifications


Unique identifier OMICS_33017
Name ImOSM
Alternative name Imbedding One Step Mutations
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Stability Stable
Source code URL
Maintained Yes




No version available



  • person_outline Arndt von Haeseler
  • person_outline Minh Anh Thi Nguyen

Publication for Imbedding One Step Mutations

ImOSM citations


Robust circadian clock oscillation and osmotic rhythms in inner medulla reflecting cortico medullary osmotic gradient rhythm in rodent kidney

Sci Rep
PMCID: 5544761
PMID: 28779094
DOI: 10.1038/s41598-017-07767-8

[…] m of osmotic pressure peaking at night was detected in the IM (p < 0.01), but not in the cortex (p = 1.00) (Fig. ). Furthermore, the ratio that IM osmotic pressure divided by cortex osmotic pressure (IMosm/cortosm) showed significant diurnal rhythm (p < 0.05) (Fig. ). This suggests that cortico-medullary osmotic pressure gradient changes diurnally depending on osmotic pressure rhythm in the IM.Fig […]


ImOSM: Intermittent Evolution and Robustness of Phylogenetic Methods

Mol Biol Evol
PMCID: 3258038
PMID: 21940641
DOI: 10.1093/molbev/msr220
call_split See protocol

[…] Assume that we have a phylogenetic tree 𝒯 and an alignment 𝒜 that evolved along 𝒯 under a model of sequence evolution ℳ. ImOSM introduces extra substitutions that occur somewhere on 𝒯, thus changing the alignment 𝒜, which otherwise perfectly fits the substitution process defined by ℳ. To this end, we utilize the concept […]

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ImOSM institution(s)
Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, University of Veterinary Medicine Vienna, Vienna, Austria
ImOSM funding source(s)
Supported by the Wiener Wissenschafts-, Forschungs- and Technologiefonds, the DFG Deep Metazoan Phylogeny project, SPP (HA1628/9), and the Genome Research in Austria project Bioinformatics Integration Network III.

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