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iMotifs specifications


Unique identifier OMICS_08108
Name iMotifs
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Mac OS
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


Publication for iMotifs

iMotifs citations


The two most common histological subtypes of malignant germ cell tumour are distinguished by global microRNA profiles, associated with differential transcription factor expression

Mol Cancer
PMCID: 2993676
PMID: 21059207
DOI: 10.1186/1476-4598-9-290

[…] between ysts and germinomas had computationally predicted binding sites in the promoter and upstream regions of the mir-302 cluster. to do this we utilized the sequence motif analysis environment imotifs [], which allows visualisation of nucleotide sequences and identifies motif matches within promoter sequences, using the scanning algorithm included in the nestedmica suite []., we analysed […]


Metamotifs a generative model for building families of nucleotide position weight matrices

BMC Bioinformatics
PMCID: 2906491
PMID: 20579334
DOI: 10.1186/1471-2105-11-348

[…] nestedmica, the command line interface of nmmetainfer was also designed to be analogous to the motif inference tool nminfer included in the suite., the metamotif visualization was implemented to the imotifs sequence motif visualization environment [] with the mac os x cocoa drawing api (objective-c programming language). metamotif model visualization was also implemented in a java based […]

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iMotifs institution(s)
Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, UK

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