IMP specifications

Information


Unique identifier OMICS_16280
Name IMP
Alternative name Integrated Meta-omic Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data MG and/or MT FASTQ paired files
Input format FASTQ
Output data The HTML reports, augmented VizBin maps, MG- and MT-level functional Krona charts, detailed schematics of the steps carried out within the IMP run, list of parameters and commands, FASTQC report, MetaQUAST report.
Output format HTML
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Version 1.4
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Shaman Narayanasamy <>

Publication for Integrated Meta-omic Pipeline

IMP institution(s)
Luxembourg Centre for Systems Biomedicine, Esch-sur-Alzette, Luxembourg; Institute of Systems Biology, Seattle, WA, USA
IMP funding source(s)
This work was supported by an ATTRACT program grant (A09/03), a European Union Joint Programming in Neurodegenerative Diseases grant (INTER/JPND/12/01), a proof-of-concept grant (PoC/13/02), an ERASysAPP grant (INTER/8888488), and CORE programme grant (CORE/15/BM/10404093), an Aide à la Formation Recherche (AFR) grant (PHD-2014-1/7934898), and a CORE junior (C15/SR/10404839), all funded by the Luxembourg National Research Fund (FNR).

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