i-GSEA4GWAS specifications

Information


Unique identifier OMICS_04384
Name improved GSEA for GWAS
Interface Web user interface
Restrictions to use None
Input data SNP p-values
Computer skills Basic
Stability Stable
Maintained Yes

i-GSEA4GWAS article

i-GSEA4GWAS citation

2015
PMCID: 4580981

[…] were retained for further consideration. we submitted the rsids and pgwma of these snps as well as gene sets from biocarta, kegg, pid and reactome curated by msigdb (as of 26 march 2014) to the i-gsea4gwas web server14. this programme identified genes within 20 kb of the snps and represented each gene by the greatest –log pgwma of the snp(s) mapped to it. gene sets were then assessed […]

i-GSEA4GWAS institution(s)
Key Laboratory of Mental Health, Institute of Psychology, Chinese Academy of Sciences, Beijing, China

i-GSEA4GWAS reviews

 (2)
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Elena Schmidt

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Web
Easy to use with few parameters and web server. Produces error messages at the end of the calculation without output or hint where the error might come from. The reason might be my large Input Association files, but I couldn't find a size limit in the documentation. Requests to the given e-mail address are not answered.

Carlos

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Web
version 2 of this tool is available at: http://gsea4gwas-v2.psych.ac.cn/inputPage.jsp

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