IMPUTE specifications

Information


Unique identifier OMICS_00062
Name IMPUTE
Alternative name IMPUTE2
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 2.3.2
Stability Stable
Maintained Yes

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IMPUTE articles

IMPUTE citations

 (8)
2017
PMCID: 5584004

[…] vs. endothelial precursors + megakaryocytes (control), total cd4+ activated (test) vs. total cd4+ nonactivated (control), we carried out formal imputation to 1000 genomes project eur data using impute2 [81] and fine-mapped causal variants in each of the 179 regions where a minimum p < 0.0001 was observed using a stochastic search method which allows for multiple causal variants […]

2017
PMCID: 5414179

[…] irb #4., imputation across 2 mb of chr5p15.33 (250,000 to 2,250,000 bps, hg19) was performed using phased haplotypes from the 1000g reference set (phase 1 integrated release 3, march 2012) and impute2 for pancreatic cancer1157 and testicular germ cell tumours28. imputed snps with low maf (<0.01) or low-quality scores (impute2 information score <0.5) were removed […]

2017
PMCID: 5341021

[…] 17. association analysis was performed for males-only, females-only and combined male and female samples of hypertensive patients versus normotensive controls using snptest, the companion program to impute23536. a logistic regression model with additive genotype coding and with pc1, pc2, age, body mass index (bmi), and genotyping batch and genotyping array (5.0 vs. 6.0) as covariates was used […]

2017
PMCID: 5333091

[…] groups) were extracted. replication in the central european nscl/p samples was based on a data set published in mangold et al.13 snps that had not been genotyped in this study were imputed using impute2 software7. genotype imputation for the case–parent trios described in beaty et al.12 was run by the geneva coordinating center58, using a worldwide 1,000 genomes project reference panel […]

2016
PMCID: 4856879

[…] represent directly typed data, and variants are referred to as perfect. they were then thinned down to gwas density based on the snps in the illumina 660-quad array, and subsequently imputed via impute2,14 using the same cross-population 1000 genomes reference panel, and effective population size ne=20 000. a 500 kb up- and down-stream buffer was included in the imputation, and variants […]

IMPUTE institution(s)
Department of Statistics, University of Oxford, Oxford, UK

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