iMS2Flux statistics

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iMS2Flux specifications

Information


Unique identifier OMICS_13425
Name iMS2Flux
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Output data If the raw data is to be output, MS measurements and retention times, this occurs immediately. Output may also be generated after the data checks and, as specified in the configuration file, at the completion of processing.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Version 7.2.1
Stability Stable
Maintained Yes

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  • person_outline Björn Junker <>

Publication for iMS2Flux

iMS2Flux in publications

 (4)
PMCID: 5832212
PMID: 29494607
DOI: 10.1371/journal.pone.0191835

[…] and interface to the ms were held at 285°c. when operated in full scan mode, the scan range was 50–700 da. mass isotopomer distribution data of the labelled amino acids were produced using the ims2flux software []., elemental mass balances on the measured conversions was performed to check the consistency of the data and reconcile mass balances []. the elemental composition matrices […]

PMCID: 5715045
PMID: 29238275
DOI: 10.1007/s11306-017-1302-z

[…] through the various pathways and providing a true representation of the metabolic state under studied condition (zamboni et al. ). a number of analysis tools such as fiatflux, openflux, 13cflux2, ims2flux are available for estimating the carbon flux from steady-state 13c-labeling information (poskar et al. ; quek et al. ; weitzel et al. ; zamboni et al. )., to investigate how change […]

PMCID: 5699530
PMID: 29188182
DOI: 10.1016/j.meteno.2017.07.001

[…] 0 °c with a hold time of 1 min., the raw gc-ms data were transformed into mdvs and corrected for the influence of unlabeled biomass from the inoculum and the natural abundance of heavy isotopes using ims2flux (), as described by ., openflux was used to compute the intracellular fluxes (, ). the software generated mass and isotopomer balances from a model in text format, which defined the reaction […]

PMCID: 4528721
PMID: 26248853
DOI: 10.1186/s12918-015-0190-y

[…] substrate uptake rate, storage formation, and on the cellular composition of r. jostii rha1 together with mass isotopomer distribution data of the labelled amino acids that were produced using the ims2flux software [] were used as model input., weighted average of 100 solutions of central metabolic fluxes of r. jostii rha1 and their respective standard errors in the non-limited condition […]


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iMS2Flux institution(s)
Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany; Plant Biology Department, Michigan State University, East Lansing, MI, USA; Institute of Pharmacy, Martin-Luther-University Halle-Wittenberg, Halle, Germany
iMS2Flux funding source(s)
This work was supported by the German Federal Ministry of Education and Research through grants 0315295 and 0315426A.

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