In silico fragmentation prediction software tools | Mass spectrometry-based untargeted metabolomics
Spectral libraries for tandem MS contain reference spectra for many compounds, but their limited chemical coverage reduces the chance for a correct and reliable identification of unknown spectra outside the database domain. On the other hand, compound databases have a much larger coverage of the chemical space, but they cannot be queried with spectral information directly. Recently, in silico fragmentation prediction allow users to search such databases of chemical structures.
Recognizes metabolites by using single and tandem mass spectrometry. SIRIUS investigates isotope and fragmentation patterns for inferring molecular formulas of small compounds. It includes features for: (i) importing datasets in common mass spectrometry file formats (ii) performing an automatic recognition of molecular ion adducts, (iii) visualizing identified sum formulas and their isotope patterns and (iv) exporting customizable results.
Facilitates improved compound identification using mass spectrometry (MS). RANSY/RAMSY is an application that reduces spectral interference and facilitates the identification of individual molecules in overlapped MS spectra. This method is designed to work using datasets that contain multiple MS spectra for the same metabolite. It can be applied for compound identification using different analytical platforms.