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In silico fragmentation prediction (MS-based metabolomic analysis)

Spectral libraries for tandem MS contain reference spectra for many compounds, but their limited chemical coverage reduces the chance for a correct and reliable identification of unknown spectra outside the database domain. On the other hand,…
MetaboLyzer
Desktop

MetaboLyzer

Aims to both simplify analysis for investigators new to metabolomics, as well…

Aims to both simplify analysis for investigators new to metabolomics, as well as provide experienced investigators the flexibility to conduct sophisticated analysis.

RANSY/RAMSY
Desktop
Web

RANSY/RAMSY Ratio Analysis NMR SpectroscopY/Ratio Analysis of Mass SpectrometrY

Allows ratio analysis of nuclear magnetic resonance/mass spectrometry (NMR/MS).…

Allows ratio analysis of nuclear magnetic resonance/mass spectrometry (NMR/MS). RANSY/RAMSY is a software package including two ratio analysis tools. RANSY was designed to analyse NMR spectra. RAMSY…

MetFrag
Web

MetFrag

In silico fragmentation for computer assisted identification of metabolite mass…

In silico fragmentation for computer assisted identification of metabolite mass spectra.

HAMMER
Desktop

HAMMER

Automated operation of Mass Frontier to construct in-silico mass spectral…

Automated operation of Mass Frontier to construct in-silico mass spectral fragmentation libraries.

ISDB-MN
Desktop

ISDB-MN In-Silico MS/MS DataBase for Molecular Networks

A pipeline for batch annotation of molecular networks against an in silico…

A pipeline for batch annotation of molecular networks against an in silico fragmented DB of Natural Products (>170000 NPs). ISDB-MN uses a dereplication process which allows annotation of all…

MetFusion
Web

MetFusion

Combine identification results from several resources, in particular, from the…

Combine identification results from several resources, in particular, from the in silico fragmenter MetFrag with the spectral library MassBank to improve compound identification.

Sweet…
Desktop

Sweet Substitute

Assists tandem mass spectrometry (MS/MS)-based glycosylation characterization…

Assists tandem mass spectrometry (MS/MS)-based glycosylation characterization from a tryptic digest. Sweet Substitute is a package developed for glycopeptides of the N-linked type. It could also…

iontree
Desktop

iontree

Provides utility functions to manage and analyse MS2/MS3 fragmentation data…

Provides utility functions to manage and analyse MS2/MS3 fragmentation data from ion trap mass spectrometry. Iontree was designed for high throughput metabolomics data with many biological samples…

SIRIUS
Desktop

SIRIUS

A java-based software framework for discovering a landscape of de-novo…

A java-based software framework for discovering a landscape of de-novo identification of metabolites using single and tandem mass spectrometry.

ACD/MS…
Desktop

ACD/MS Fragmenter

Predicts fragment ions based on established MS fragmentation rules from the…

Predicts fragment ions based on established MS fragmentation rules from the literature and allows you to review the rules to gain a clear understanding of your molecule’s fragmentation.

Mass Frontier
Desktop

Mass Frontier

Provides the tools required to quickly transform mass spectral data into…

Provides the tools required to quickly transform mass spectral data into results.

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