is-rSNP specifications

Information


Unique identifier OMICS_01930
Name is-rSNP
Alternative name In silico regulatory SNP detection
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


This tool is not available anymore.

is-rSNP article

is-rSNP citations

 (2)
2015
PMCID: 4643966

[…] variants. haploreg v3 (http://compbio.mit.edu/haploreg) was employed to identify chromatin states, conservation and regulatory motif alterations of risk variants and snps [27]. in addition, is-rsnp (http://bioinformatics.research.nicta.com.au/software/is-rsnp/) was used to predict whether a snp is a regulatory snp and the set of transcription factors (tfs) with affected binding [28]. […]

2014
PMCID: 4222374

[…] sas (v9.3, sas institute inc, cary, nc, usa) software. the regional plot was plotted from the locuszoom, a web-based plotting tool (csg.sph.umich.edu/locuszoom) [22]. the in silico prediction tool is-rsnp was used to predict potential regulatory snps (rsnps) [23]., a total of 574 type 2 diabetes study participants, comprising 217 cases of dn and 357 type 2 diabetes patients without dn […]

is-rSNP institution(s)
Department of Computer Science and Software Engineering; NICTA, Victoria Research Lab, The University of Melbourne, Victoria; Bioinformatics and Systems Integration, The Blood and DNA Profiling Facility, Baker IDI Heart and Diabetes Institute, Prahran, Victoria; Metastasis Research Lab, Peter MacCallum Cancer Centre, St Andrews Place, East Melbourne, Victoria; Department of Biochemistry and Molecular Biology. The University of Melbourne, Victoria, Australia

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Web
There is no standalone version for this tool. For the web service, the tool restricts the maximum number of input SNPs as 20.