IncaRNAtion specifications

Information


Unique identifier OMICS_08693
Name IncaRNAtion
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Jérôme Waldispühl

Publication for IncaRNAtion

IncaRNAtion citations

 (2)
library_books

Reconstruction of ancestral RNA sequences under multiple structural constraints

2016
BMC Genomics
PMCID: 5123390
DOI: 10.1186/s12864-016-3105-4

[…] [] or with an ant algorithm as in antaRNA-ant []. The observed diversity in the quality of sequences at a minimal distance from each other demonstrates the need of more global tools, like the one of IncaRNAtion [] for example.Through the annotation of Rfam families, manual curation is needed to distinguish between families of similar sequences with known distinct function or structure, which are […]

library_books

Complete RNA inverse folding: computational design of functional hammerhead ribozymes

2014
Nucleic Acids Res
PMCID: 4191386
PMID: 25209235
DOI: 10.1093/nar/gku740

[…] lect solutions of inverse folding that are optimal with respect to various measures (not only ensemble defect), as we have done in this paper.We have additionally tested the programs RNAdesign () and IncaRNAtion (), with the Rfam consensus structure of PLMVd hammerhead as target structure. Only 5.84% [resp. 2.57%] of the sequences returned by RNAdesign using eos(1) [resp. IncaRNAtion] actually fol […]

IncaRNAtion institution(s)
School of Computer Science & McGill Centre for Bioinformatics, McGill University, Montréal, QC, Canada

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