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InCHlib specifications

Information


Unique identifier OMICS_13010
Name InCHlib
Alternative name Interactive Cluster Heatmap library
Interface Application programming interface
Restrictions to use None
Programming languages Javascript
License MIT License
Computer skills Advanced
Version 1.2.0
Stability Stable
Requirements
jQuery, KineticJS, Java
Maintained Yes

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Documentation


Maintainer


  • person_outline Daniel Svozil

Publication for Interactive Cluster Heatmap library

InCHlib citations

 (4)
library_books

Cell Based Reporter System for High Throughput Screening of MicroRNA Pathway Inhibitors and Its Limitations

2018
Front Genet
PMCID: 5835079
PMID: 29535760
DOI: 10.3389/fgene.2018.00045

[…] xperiment, both potential inhibitors and activators of RNA silencing, were selected and tested in the validation dose-response experiments. Data were hierarchically clustered using the Python library inchlib_clust and visualized with the corresponding JavaScript library InCHlib (Skuta et al., ). The clustering was performed with a combination of the Ward's linkage algorithm (Ward, ) and the classi […]

library_books

Interactive Toxicogenomics: Gene set discovery, clustering and analysis in Toxygates

2017
Sci Rep
PMCID: 5431224
PMID: 28469246
DOI: 10.1038/s41598-017-01500-1

[…] Once a gene set of interest has been defined, it may be clustered and visualised as a heatmap by using the show heat map command on the tools menu. The visualisation functionality comes from InChLib. The clustering itself is carried out using the HClust R function on the server side. For performance reasons, we currently limit clustering to sets of 1000 genes or less. In the clustering in […]

library_books

plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters

2017
Nucleic Acids Res
PMCID: 5570173
PMID: 28453650
DOI: 10.1093/nar/gkx305

[…] nked to a treatment of interest.The visualizations of within-cluster coexpression patterns are 2-fold: first, a hierarchically clustered heatmap visualization, plotted using a modified version of the InCHlib (http://www.openscreen.cz/software/inchlib/home) JavaScript library, offers a direct view of patterns in and relationships between the supplied normalized gene expression values. The dendrogra […]

library_books

Whole transcriptome analysis of UUO mouse model of renal fibrosis reveals new molecular players in kidney diseases

2016
Sci Rep
PMCID: 4870569
PMID: 27189340
DOI: 10.1038/srep26235

[…] jamini-Hochberg FDR < 0.05) in at least one of the comparisons. are available as interactive links online (http://epigenomics.fleming.gr/metaseqr_runs/HS/000005sub/ and http://epigenomics.fleming.gr/inchlib_heatmaps/HS/BRFAA/Charonis/val_005_r/). […]

Citations

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InCHlib institution(s)
Laboratory of Informatics and Chemistry, Faculty of Chemical Technology, Institute of Chemical Technology Prague, Prague, Czech Republic; CZ-OPENSCREEN, Institute of Molecular Genetics of the ASCR, Prague, Czech Republic
InCHlib funding source(s)
Sponsored by the Technology Agency of the Czech Republic.

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