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InCroMAP specifications


Unique identifier OMICS_00855
Name InCroMAP
Alternative name Integrated analysis of Cross-platform MicroArray and Pathway data
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 1.5
Stability Stable
Maintained No


No version available


This tool is not available anymore.

Publications for Integrated analysis of Cross-platform MicroArray and Pathway data

InCroMAP citations


Beyond genomics: understanding exposotypes through metabolomics

Hum Genomics
PMCID: 5787293
PMID: 29373992
DOI: 10.1186/s40246-018-0134-x

[…] tly integrated onto the XCMSOnline platform, with an added function to upload transcriptomic and proteomic data, for integrated pathway analysis []. Other notable software includes MarVis-Pathway [], InCroMAP [], GAM [], and MetaCore™ (Thomson Reuters Corporation, Toronto, Canada) that can integrate multiple types of systems-level data for pathway interrogation. Combining this type of data with mu […]


Ab initio chemical safety assessment: A workflow based on exposure considerations and non animal methods

PMCID: 5695905
PMID: 29214231
DOI: 10.1016/j.comtox.2017.10.001
call_split See protocol

[…] h. For the pathway analysis, following partially the approach described previously by Kohonen et al. on doxorubicin, we applied the Kyoto Encyclopedia of Genes and Genomes (KEGG) approach using the ‘Integrated analysis of Cross-platform MicroArray and Pathway data’ (InCroMap) software in order to select the most relevant molecular pathways influenced by the treatment with x. We observed important […]


Current and Emerging Technologies for Probing Molecular Signatures of Traumatic Brain Injury

PMCID: 5582086
PMID: 28912750
DOI: 10.3389/fneur.2017.00450

[…] rather it is to understand biological mechanisms. To do this, it is necessary to map metabolomic and proteomic data onto known pathways.The abovementioned software (MetaCore; IPA) and others, such as InCRoMAP (), 3Omics (), IMPaAa (), already allow the mapping of different molecular features (gene, miRNA, protein, metabolite) into biological pathways as networks of interconnected nodes, allowing t […]


From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] h-resolution mass spectrometry; ICT: Isotope Correction Toolbox; IIS: Integrated Interactome System; iMet-Q: Intelligent Metabolomic Quantitation; IMPaLA: Integrated Molecular Pathway Level Analysis; InCroMAP: Integrated Analysis of Cross-Platform Microarray and Pathway Data; IOKR: Input Output Kernel Regression; iPATH: Interactive Pathways Explorer; IPO: Isotopologue Parameter Optimization; ISDB: […]


Effects of pre analytical processes on blood samples used in metabolomics studies

Anal Bioanal Chem
PMCID: 4471316
PMID: 25736245
DOI: 10.1007/s00216-015-8565-x

[…] alytical techniques. If systems-biology approaches were used and multi-omics data need to be combined and evaluated for pathway visualization and enrichment, sophisticated software tools, for example InCroMAP, are needed [].Design the experiment (see section “”). This step should include joint discussion by medical researchers, preanalytical experts, and analytical (bio)chemists to draft and defin […]

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InCroMAP institution(s)
Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany
InCroMAP funding source(s)
Innovative Medicine Initiative Joint Undertaking (IMI JU) [115001] (MARCAR project)

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