InCroMAP specifications

Information


Unique identifier OMICS_00855
Name InCroMAP
Alternative name Integrated analysis of Cross-platform MicroArray and Pathway data
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 1.5
Stability Stable
Maintained No

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Publications for Integrated analysis of Cross-platform MicroArray and Pathway data

InCroMAP in publications

 (6)
PMCID: 5842623
PMID: 29514696
DOI: 10.1186/s13075-018-1531-1

[…] kbd cartilage with oa cartilage, an integrative pathway enrichment analysis of the genome-wide dna methylation and the mrna expression profiles conducted in articular cartilage was performed by incromap software., we identified 241 common genes altered in both the dna methylation profile and the mrna expression profile of articular cartilage of kbd versus oa, including chst13 (nm_152889, […]

PMCID: 5582086
PMID: 28912750
DOI: 10.3389/fneur.2017.00450

[…] it is to understand biological mechanisms. to do this, it is necessary to map metabolomic and proteomic data onto known pathways., the abovementioned software (metacore; ipa) and others, such as incromap (), 3omics (), impaaa (), already allow the mapping of different molecular features (gene, mirna, protein, metabolite) into biological pathways as networks of interconnected nodes, allowing […]

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] calculates pathway activity scores to represent the potential metabolic pathway activities and performs statistical analysis to investigate differences in activity between conditions. tools like integrated analysis of cross-platform microarray and pathway data (incromap) [], integrated interactome system (iis) [], kazusa plant pathway viewer (kappa-view4) [], mapman [], prometra (which […]

PMCID: 5215403
PMID: 27273980
DOI: 10.1002/wnan.1413

[…] for recent next‐generation sequencing (e.g., ref and future generation of hts data from selected toxicity‐reflective gene sets. open source or commercial bioinformatics tools, such as—respectively—incromap or ingenuity pathway analysis (ingenuity® systems, www.ingenuity.com), rapidly sort omics‐derived data into mechanistically meaningful results, enabling grouping of nms into clusters by gene […]

PMCID: 4527231
PMID: 26251672
DOI: 10.1186/s13069-015-0031-z

[…] gene expression data (gene ontology (go) and kyoto encyclopedia of genes and genomes (kegg) pathways) was conducted using an open access, high-level cross-platform microarray dataset analysis tool (incromap) (http://www.ra.cs.uni-tuebingen.de/software/incromap/). raw data are made publically available on the ncbi gene expression omnibus database, with accession number gse68001., […]


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InCroMAP institution(s)
Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, Tübingen, Germany
InCroMAP funding source(s)
Innovative Medicine Initiative Joint Undertaking (IMI JU) [115001] (MARCAR project)

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