Unlock your biological data

?

Try: RNA sequencing CRISPR Genomic databases DESeq

1 - 6 of 6 results
filter_list Filters
language Programming Language
build Technology
healing Disease
settings_input_component Operating System
tv Interface
computer Computer Skill
copyright License
1 - 6 of 6 results
VarScan
A platform-independent mutation caller for targeted, exome, and whole-genome resequencing data generated on Illumina, SOLiD, Life/PGM, Roche/454, and similar instruments. The newest version, VarScan 2, is written in Java, so it runs on most operating systems. It can be used to detect different types of variation: 1) germline variants (SNPs and indels) in individual samples or pools of samples, 2) multi-sample variants (shared or private) in multi-sample datasets (with mpileup), 3) somatic mutations, LOH events, and germline variants in tumor-normal pairs and 4) somatic copy number alterations (CNAs) in tumor-normal exome data.
SPLINTER / Short indel Prediction by Large deviation Inference and Nonlinear True frequency Estimation by Recursion
Detects and quantifies short indels and substitutions in large pools. SPLINTER allows accurate detection and quantification of short insertions, deletions, and substitutions by integrating information from the synthetic DNA library to tune SPLINTER and quantify specificity and sensitivity for every experiment in order to accurately detect and quantify indels and substitutions.
Dindel
A Bayesian method to call indels from short-read sequence data in individuals and populations by realigning reads to candidate haplotypes that represent alternative sequence to the reference. The candidate haplotypes are formed by combining candidate indels and SNVs identified by the read mapper, while allowing for known sequence variants or candidates from other methods to be included. In our probabilistic realignment model we account for base-calling errors, mapping errors, and also, importantly, for increased sequencing error indel rates in long homopolymer runs.
0 - 0 of 0 results
1 - 5 of 5 results
filter_list Filters
computer Job seeker
Disable 1
person Position
thumb_up Fields of Interest
public Country
language Programming Language
1 - 5 of 5 results

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.