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Indel detection software tools | Genome annotation

It is often assumed that it is unlikely that the same insertion or deletion (indel) event occurred at the same position in two independent evolutionary lineages, and thus, indel-based inference of phylogeny should be less subject to homoplasy…
SeqFIRE
Web

SeqFIRE Sequence Feature and Indel Region Extractor

Enables the automated identification and extraction of indels from protein…

Enables the automated identification and extraction of indels from protein sequence alignments. The program can also extract conserved blocks and identify fast evolving sites using a combination of…

RELINDEL
Desktop
Web

RELINDEL

A method to quantify the reliability of indel characters by measuring how often…

A method to quantify the reliability of indel characters by measuring how often they appear in a set of alternative multiple sequence alignments. This approach is based on the assumption that indels…

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