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InDelFixer specifications

Information


Unique identifier OMICS_22783
Name InDelFixer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output format SAM
Biological technology Illumina, Roche
Operating system Unix/Linux
Programming languages Java
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1
Stability Stable
Requirements
JDK
Maintained Yes

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Maintainer


  • person_outline Armin Topfer

InDelFixer citation

library_books

Full length haplotype reconstruction to infer the structure of heterogeneous virus populations

2014
Nucleic Acids Res
PMCID: 4132706
PMID: 24972832
DOI: 10.1093/nar/gku537

[…] and analyzed by using bioedit 7, phylip 3.68 and mega 5., the read data sets from the three ngs platforms 454/roche, illumina and pacbio, were converted to fastq files. for 454/roche and pacbio, the indelfixer software (http://www.cbg.ethz.ch/software/indelfixer/) was used to first extract reads and to perform quality clipping from both ends of the reads with a phred threshold of 30. second, […]


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