A software tool for calling short indels in next generation sequencing data. Official website Specifications Classification
Specifications Desktop app Software type: Package Interface: Command line interface Restrictions to use: None Operating system: Unix/Linux Computer skills: Advanced Stability: Stable Write a review View all reviews 0 user review Write a review about this tool Sign up for free to join and share with our community.Already have an account? Sign in to review this tool. Cancel No review has been posted. Open an issue View all issues 0 issue Open an issue about this tool Sign up for free to join and share with our community.Already have an account? Sign in to open an issue. Cancel No open issue. Classification High-throughput sequencing Whole-genome sequencing Germline SNP detection High-throughput sequencing Whole-genome sequencing Indel detection Literature (Neuman et al., 2013) Analysis of insertion-deletion from deep-sequencing data: software evaluation for optimal detection. Briefings in bioinformatics. PMID: 22707752 33 related tools Assembly B… OMIC_04668 BreakDance… OMIC_00307 BreakSeek OMIC_09064 DeNovoGear OMIC_00083 Dindel OMIC_00096 Discoverin… OMIC_00267 FermiKit OMIC_09503 FreeBayes OMIC_00059 GATK Unifi… OMIC_00080 HeurAA OMIC_00097 Illuminato… OMIC_02165 indelMINER OMIC_07704 Manta OMIC_09180 Mendelian-… OMIC_00309 MoDIL OMIC_00066 Pair Read … OMIC_02288 piCALL OMIC_02098 Pindel OMIC_00321 PyroHMMvar OMIC_00069 SAMtools OMIC_00090 Scalpel OMIC_05395 Snippy OMIC_03551 SOAPindel OMIC_00099 SomaticInd… OMIC_00091 SomaticSeq OMIC_10002 SPLITREAD OMIC_00323 Strelka OMIC_00093 Structural… OMIC_00101 Syzygy OMIC_02166 VAAL OMIC_02170 VARiD OMIC_02163 VarScan OMIC_00094 Vindel OMIC_06556 Show more related tools (29)