INDELseek specifications

Information


Unique identifier OMICS_16232
Name INDELseek
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data The alignments files.
Input format BAM, SAM
Output data The identified complex indel(s) at single read level.
Output format VCF
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Requirements SAMtools, GNU Parallel
Maintained Yes

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Documentation


Maintainer


  • person_outline Chun Hang Au <>

Publication for INDELseek

INDELseek institution(s)
Division of Molecular Pathology, Department of Pathology, Hong Kong Sanatorium & Hospital, Happy Valley, Hong Kong; Department of Medicine, The University of Hong Kong, Pok Fu Lam, Hong Kong; Department of Surgery, The University of Hong Kong, Pok Fu Lam, Hong Kong; Department of Surgery and Cancer Genetics Center, Hong Kong Sanatorium & Hospital, Happy Valley, Hong Kong; Hong Kong Hereditary Breast Cancer Family Registry, Shau Kei Wan, Hong Kong
INDELseek funding source(s)
Supported by the Hong Kong Hereditary Breast Cancer Family Registry, Dr. Ellen Li Charitable Foundation, and the S K Yee Medical Foundation.

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