Index_investigator specifications
- Unique identifier:
- OMICS_18723
- Interface:
- Command line interface
- Input data:
- A file containing SNPs and a tab separated info file containing 4 columns: Samplename, Lane1, Lane2, Machine.
- Output data:
- A text file with nine columns and two rows per unbalanced heterozygote.
- Biological technology:
- Illumina
- License:
- MIT License
- Stability:
- Stable
- Software type:
- Application/Script
- Restrictions to use:
- None
- Input format:
- TSV, VCF
- Output format:
- TXT
- Programming languages:
- Perl, R
- Computer skills:
- Advanced
- Maintained:
- Yes
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Index_investigator distribution
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Index_investigator support
Maintainers
- Gregory Owens <>
- Sam Yeaman <>
- Loren Rieseberg <>
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Publications
-
(Owens et al., 2017)
A Novel Post Hoc Method For Detecting Index Switching Finds No Evidence For Increased Switching On The Illumina HiSeq X.
BioRxiv.
DOI: 10.1101/142356
Institution(s)
Department of Botany and Beaty Biodiversity Centre, University of British Columbia, BC, Canada; Department of Biological Sciences, University of Calgary, AB, Canada
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