Index_investigator specifications
Information
| Unique identifier | OMICS_18723 |
|---|---|
| Name | Index_investigator |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | A file containing SNPs and a tab separated info file containing 4 columns: Samplename, Lane1, Lane2, Machine. |
| Input format | TSV, VCF |
| Output data | A text file with nine columns and two rows per unbalanced heterozygote. |
| Output format | TXT |
| Biological technology | Illumina |
| Programming languages | Perl, R |
| License | MIT License |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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Maintainers
- person_outline Gregory Owens <>
- person_outline Sam Yeaman <>
- person_outline Loren Rieseberg <>
Publication for Index_investigator
library_books
A novel post hoc method for detecting index switching finds no evidence for increased switching on the Illumina HiSeq X.
2018 Mol Ecol Resour
PMID: 28817224
DOI: 10.1111/1755-0998.12713
Index_investigator institution(s)
Department of Botany and Beaty Biodiversity Centre, University of British Columbia, BC, Canada; Department of Biological Sciences, University of Calgary, AB, Canada
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