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influx_s specifications

Information


Unique identifier OMICS_06427
Name influx_s
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Bacteria
    • Escherichia coli

Versioning


No version available

Publication for influx_s

influx_s citations

 (4)
library_books

From correlation to causation: analysis of metabolomics data using systems biology approaches

2018
Metabolomics
PMCID: 5829120
PMID: 29503602
DOI: 10.1007/s11306-018-1335-y

[…] enführ et al. ; Sauer ; Wiechert and Nöh ; Zamboni ), together with specific software platforms: FiatFlux (Zamboni et al. ); Isodyn (Selivanov et al. ); METRAN (Yoo et al. ); OpenFlux (Quek et al. ); Influx_s (Sokol et al. ); 13CFLUX2 (Weitzel et al. ); INCA (Young ); WUFlux (He et al. ). In many cases, a system of balance equations around isotopomers—which depend on specific fluxes—is solved to p […]

library_books

Difference in C3–C4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

2016
BMC Microbiol
PMCID: 4949768
PMID: 27435978
DOI: 10.1186/s12866-016-0778-4

[…] ptake rates and biomass yields were measured for individual conditions. Extracellular metabolite secretion was measured using 1H NMR with a previously described protocol []. For in silico simulation, Influx_s was used []. […]

library_books

OpenFLUX2: 13C MFA modeling software package adjusted for the comprehensive analysis of single and parallel labeling experiments

2014
Microb Cell Fact
PMCID: 4263107
PMID: 25408234
DOI: 10.1186/s12934-014-0152-x

[…] rformance computational software suites for performing flux calculations have been developed and described, e.g., 13CFLUX [] and its reinforced version – 13CFLUX2 [], METRAN [,], OpenFLUX [], FIA [], influx_s [], OpenMebius [].These software toolboxes most often automatically generate metabolite and isotopomer balance models relying on an initially user-defined simple notation of metabolic network […]

call_split

The Carbon Storage Regulator (Csr) System Exerts a Nutrient Specific Control over Central Metabolism in Escherichia coli Strain Nissle 1917

2013
PLoS One
PMCID: 3688793
PMID: 23840455
DOI: 10.1371/journal.pone.0066386
call_split See protocol

[…] Fluxes were calculated using influx_s software , in which both mass balances and carbon atom transitions describing the biochemical reaction network were implemented. The metabolic network contained the main pathways of E. coli c […]

Citations

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influx_s institution(s)
INSA, UPS, INP, LISBP, Université de Toulouse, Toulouse, France

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