Informatics for RNA-seq specifications


Unique identifier OMICS_16746
Name Informatics for RNA-seq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl, R, Shell (Bash)
License Other
Computer skills Advanced
Stability Stable
Maintained Yes




No version available



  • person_outline Malachi Griffith

Publication for Informatics for RNA-seq

Informatics for RNA-seq citations


Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers

PLoS Comput Biol
PMCID: 4900641
PMID: 27281025
DOI: 10.1371/journal.pcbi.1004916

[…] throughput sequence data from commonly used next-generation sequencing platforms, or analysis challenge, such as what to do with a gene list, is addressed by the workshop. An example workflow for the Informatics for RNA-seq Analysis workshop is provided in []. Within the workshop, faculty provide brief lectures on the data analysis concepts and bioinformatic approach as well as give an overview o […]


Navigating the changing learning landscape: perspective from

Brief Bioinform
PMCID: 3771234
PMID: 23515468
DOI: 10.1093/bib/bbt016

[…] []. These niches topic areas are reviewed on an annual basis and new workshops regularly introduced to stay current of continuing education needs in bioinformatics. Recent additions in 2013 include ‘Informatics for RNA-seq Analysis’ and ‘Flow Cytometry Data Analysis using R’ ( Figure 1:Rather than move all workshops to an online delivery format as exemplified in MOOCs […]

Informatics for RNA-seq institution(s)
McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO, USA; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, USA; Department of Genetics, Washington University School of Medicine, St. Louis, MO, USA; Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA
Informatics for RNA-seq funding source(s)
This work was supported by NIH award K99HG007940 and K22CA188163.

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