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Protocols

inGAP-sv specifications

Information


Unique identifier OMICS_00319
Name inGAP-sv
Alternative name inGAP
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

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Publication for inGAP-sv

inGAP-sv citations

 (94)
library_books

Small tumor necrosis factor receptor biologics inhibit the tumor necrosis factor p38 signalling axis and inflammation

2018
Nat Commun
PMCID: 5893557
PMID: 29636466
DOI: 10.1038/s41467-018-03640-y

[…] jnk-inhibiting peptide composed of d-amino acids for the treatment of stroke, inflammation, severe inner ear disorders and acute sensorineural hearing loss; the islet neogenesis-associated protein (ingap) peptide (exsulin corporation) for islet beta cell neogenesis and improvement in glycemic control in type 1 diabetic patients, and azx100 (capstone therapeutics), a peptide derived from hsp20 […]

library_books

Damage to epitaxial GaN layer on Al2O3 by 290 MeV 238U32+ ions irradiation

2018
Sci Rep
PMCID: 5841313
PMID: 29515199
DOI: 10.1038/s41598-018-22321-w

[…] in carrier mobility of algan/gan hfet devices with increasing ion fluence. titov et al. reported that mev o, li, and si ions lead to a decrease in the free-carrier concentration of gan and ingap materials. as the application of gan-based devices in the space and reactor fields continues to grow and their size has been ceaselessly minimized, more information regarding defects […]

library_books

Biomimetic light harvesting funnels for re directioning of diffuse light

2018
Nat Commun
PMCID: 5812990
PMID: 29445168
DOI: 10.1038/s41467-018-03103-4

[…] much lower (~800–1200 nm) than photon energies in the maximum of the sunlight spectrum (~500–600 nm). while other photovoltaic materials with much higher energy conversion efficiencies such as ingap exist for this spectral range, they are, unfortunately, extremely expensive. therefore, they are often used in combination with solar light concentrators that allow collecting light from larger […]

library_books

A review of somatic single nucleotide variant calling algorithms for next generation sequencing data

2018
Comput Struct Biotechnol J
PMCID: 5852328
PMID: 29552334
DOI: 10.1016/j.csbj.2018.01.003

[…] we will also explain the core algorithm of each variant caller and, if applicable, highlight the strengths and caveats. germline-only callers, such as gatk unifiedgenotyper/haplotypecaller, ingap, and maq , , , are not included in this review. although unifiedgenotyper and haplotypecaller have been used for somatic variant calling, their core algorithms are not designed for this task […]

library_books

Investigation on the differentiation of two Ustilago esculenta strains implications of a relationship with the host phenotypes appearing in the fields

2017
BMC Microbiol
PMCID: 5719756
PMID: 29212471
DOI: 10.1186/s12866-017-1138-8

[…] grey jiaobai of the longjiao 2# variety were deposited in genbank under accession number srr5889164. genome analysis tk (version 1.6) and sam tools 1.9 were used to identify the snps and indels. ingap-sv was used to identify the structure variations []., genomic dna of the fungi was extracted by the ctab method []. fragments were amplified by a standard pcr procedure with primers […]

library_books

Expression of REG family genes in human inflammatory bowel diseases and its regulation

2017
PMCID: 5655384
PMID: 29090282
DOI: 10.1016/j.bbrep.2017.10.003

[…] are structurally similar proteins belonging to the calcium-dependent (c-type) lectin superfamily. in humans, five reg family genes (i.e., reg iα, reg iβ, reg-related sequence (pseudogene), hip/pap (ingap), and reg iii) are tandemly ordered in the 95 kbp region of chromosome 2p12, whereas reg iv is located on chromosome 1q12-q21 , . the first reg gene was discovered in rat regenerating […]


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inGAP-sv institution(s)
Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai, China

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