Ingenuity Variant Analysis pipeline

Ingenuity Variant Analysis specifications

Information


Unique identifier OMICS_05452
Name Ingenuity Variant Analysis
Interface Web user interface
Restrictions to use License purchase required
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Ingenuity Variant Analysis Team <>

Additional information


A free trial is available on the site upon request. A registration is needed to access to tools.

Ingenuity Variant Analysis IN pipelines

 (5)
2017
PMCID: 5473876
PMID: 28623346
DOI: 10.1038/s41598-017-02434-4

[…] inheritance patterns were taken into account. afterwards, variants of interest were evaluated using alamut visual mutation interpretation software v2.7 rev. 1 (interactive biosoftware), ingenuity variant analysis (qiagen, 2015 release spring), cadd scores v1.3 (http://cadd.gs.washington.edu/home), genome aggregation database (gnomad) browser (http://gnomad.broadinstitute.org), […]

2017
PMCID: 5655919
PMID: 28748566
DOI: 10.1111/bjh.14863

[…] calling was performed by a maximum likelihood approach on a bayesian model. variants were called with a minimum of 9 ×  coverage, 3 counts and 25% frequency. variants were further filtered using the ingenuity variant analysis tool (qiagen), excluding the low quality scores and variants (>1% in background population), and including variants found within the 87‐gene list and variants associated […]

2016
PMCID: 4887894
PMID: 27284308
DOI: 10.3892/etm.2016.3241

[…] performed using nextgene® software (version 2.4.1; softgenetics, llc., state college, pa, usa). all single nucleotide variants (snvs) and indels were saved in a vcf file format, and upladed to the ingenuity variant analysis platform (qiagen gmbh) for biological analysis and interpretation., the candidate variants obtained from wes were first screened by the databases of the 1000 genomes […]

2016
PMCID: 4915495
PMID: 26818911
DOI: 10.1002/jbmr.2797

[…] and variant calling of single nucleotide variants (snvs) and short insertions and deletions (indels) was undertaken using platypus (v0.5.1).18 analysis of coding variants was undertaken using ingenuity variant analysis. to search for variants causing hypocalcemia and keratoconus under autosomal dominant inheritance models, variants with a minor allele frequency (maf) >5% within […]

2014
PMCID: 4299714
PMID: 25629078
DOI: 10.1002/mgg3.111

[…] hiseq 2000 platform at 75 base paired-end sequencing (san diego, ca). sequence output was inspected and aligned against human reference genome hg19, and variants were filtered and annotated using ingenuity variant analysis tool by the university of michigan bioinformatics core. in the yale center for genome analysis, the exome sequencing and subsequent analysis were modified from a previous […]

Ingenuity Variant Analysis reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Ingenuity Variant Analysis