InMoDe specifications

Information


Unique identifier OMICS_14289
Name InMoDe
Alternative name Intra-Motif Dependencies
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data A DNA sequence.
Output data An XML representation, a sequence logo of the position-specific mononucleotide marginals of the model, a sequence logo of the reverse complement of the position-specific mononucleotide marginals of the model, a conditional sequence logo
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Ralf Eggeling <>

Publication for Intra-Motif Dependencies

InMoDe institution(s)
Institute of Computer Science, Martin Luther University Halle-Wittenberg, Halle, Germany; Department of Computer Science, Helsinki Institute for Information Technology (HIIT), University of Helsinki, Helsinki, Finland; German Center for Integrative Biodiversity Research (iDiv), Halle-Jena-Leipzig, Leipzig, Germany
InMoDe funding source(s)
This work was supported by Reisestipendium des allg. Stiftungsfonds der MLU Halle–Wittenberg, Deutsche Forschungsgemeinschaft (grant no. GR 3526/1) and the Academy of Finland (Center of Excellence COIN).

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