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iNPS

NPS is a widely used software package for detecting nucleosome positions from MNase-seq data, but its accuracy needs much improvement. iNPS was improved by adding two major modifications to NPS to precisely determine the boundary of nucleosomes and to merge or separate shoulder peaks based on their relationship to neighboring major peaks.

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1 user review

1 user review

avilella's avatar image avilella's country flag

avilella

Promising software validated by 3rd party scientist but the website is down:

http://www.picb.ac.cn/hanlab/
The cached version points to a page with the software to download, but link is also down:
http://www.picb.ac.cn/hanlab/files/iNPS_V1.2.2.zip

iNPS forum

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iNPS versioning

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iNPS classification

iNPS specifications

Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Interface:
Command line interface
Operating system:
Unix/Linux
Version:
1.2.0
Maintained:
No

Credits

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Publications

Institution(s)

Key Laboratory of Computational Biology, Chinese Academy of Sciences-Max Planck Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Yue Yang Road, Shanghai, China; Graduate University of Chinese Academy of Sciences, Beijing, China; Beijing Key Lab of Traffic Data Analysis and Mining, School of Computer and Information Technology, Beijing Jiaotong University, Beijing, China; Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Yue Yang Road, Shanghai, China

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