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Insertion sequence detection software tools | Genome annotation

Insertion sequences (ISs) are simple transposable elements present in most bacterial and archaeal genomes and play an important role in genomic evolution. The recent expansion of sequenced genomes offers the opportunity to study ISs comprehensively,…
ISfinder
Dataset

ISfinder Insertion Sequences finder

A dedicated database for bacterial insertion sequences (ISs). One of its…

A dedicated database for bacterial insertion sequences (ISs). One of its functions is to assign IS names and to provide a focal point for a coherent nomenclature. It is also the repository for ISs.…

ISEScan
Desktop

ISEScan

Automates identification of insertion sequence (IS) in prokaryotic genomes.…

Automates identification of insertion sequence (IS) in prokaryotic genomes. ISEScan is a pipeline capable of providing the detailed IS information without requiring the availability of the…

G T A T C G C T A
ISQuest
Desktop

ISQuest

Identifies bacterial insertion sequences (ISs) and their sequence…

Identifies bacterial insertion sequences (ISs) and their sequence elements-inverted and direct repeats-in raw read data or contigs using flexible search parameters. ISQuest is capable of finding ISs…

ISsaga
Web

ISsaga Insertion Sequence semi-automatic genome annotation

Provides computational tools and methods for high-quality insertion sequence…

Provides computational tools and methods for high-quality insertion sequence (IS) annotation. ISsaga uses established ISfinder annotation standards and permits rapid processing of single or multiple…

OASIS
Desktop

OASIS Optimized Annotation System for Insertion Sequences

A computational tool for automated annotation of insertion sequences (ISs).…

A computational tool for automated annotation of insertion sequences (ISs). OASIS takes advantage of widely available transposase annotations to identify candidate ISs and then uses a computationally…

IScan
Desktop

IScan

Identifies transposase sequences, inverted repeats and candidate target direct…

Identifies transposase sequences, inverted repeats and candidate target direct repeats of insertion sequences (ISs) in complete genomes. IScan is able to identify ISs with an arbitrary number of…

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