Protocols

InSilico DB specifications

Information


Unique identifier OMICS_30612
Name InSilico DB
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Allowed
Maintained No

Publication for InSilico DB

InSilico DB citations

 (2)
call_split

Role for the ATPase inhibitory factor 1 in the environmental carcinogen induced Warburg phenotype

2017
Sci Rep
PMCID: 5428028
PMID: 28298645
DOI: 10.1038/s41598-017-00269-7
call_split See protocol

[…] on) with ATPIF1 mRNA expression levels across tumors, and GSEA was used to evaluate gene sets enriched for either negatively or positively correlated genes. Published GSE20238 was downloaded from the InSilico DB Genomic Datasets Hub (https://insilicodb.com/), and analyzed by using the GSEA v2.07 software (http://www.broad.mit.edu/gsea), as previously described. To account for gene-gene correlation […]

library_books

NexGenEx Tom: a gene expression platform to investigate the functionalities of the tomato genome

2015
BMC Plant Biol
PMCID: 4340097
PMID: 25849067
DOI: 10.1186/s12870-014-0412-2

[…] owing the definition of appropriate workflows for reproducible analyses. NGS-Trex [] is a web based platforms, exclusively dedicated to NGS data analysis, offering tools within a predefined workflow. InSilico DB [] is a web based data storage and processing hub, free for basic usage and under payment for expanded analyses. It offers access to large pre-processed datasets from different species, bu […]

InSilico DB institution(s)
Institut de Recherches Interdisciplinaires et de Developpements en Intelligence Artificielle, the Computer and Decision Engineering Department, Universite Libre de Bruxelles, Bruxelles, Belgium; IRIBHM, School of Medicine, Campus Hospitalo-Facultaire Erasme, Universite Libre de Bruxelles, Bruxelles, Belgium; The Computational Modeling Lab (CoMo) Department of Computer Science Faculty of Sciences (WE) Vrije Universiteit Brussel, Brussels, Belgium
InSilico DB funding source(s)
Supported by Innoviris, the Brussels Institute for Research and Innovation.

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