InSilicoSpectro statistics

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InSilicoSpectro specifications


Unique identifier OMICS_03358
Name InSilicoSpectro
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for InSilicoSpectro

InSilicoSpectro in publications

PMCID: 5919691
PMID: 29659575
DOI: 10.1371/journal.pgen.1007346

[…] 200 bp downstream of tss of the genes in each cluster. the background sequence file was generated by using the computer program ‘’ in the bioinformatics cpan perl module of insilicospectro-databanks version 0.0.43. the matcompare program in the cread package was used to compute the similarity between the identified dme motif and those in the transfac, jaspar and encode […]

PMCID: 3441486
PMID: 23028676
DOI: 10.1371/journal.pone.0044913

[…] are not necessarily suited for the natural product or synthetic chemist working with cyclic peptides., most of the available tools with a graphical user interface (gui; e.g. proteinprospector , insilicospectro , , proteomics toolkit , peptideart , mmass ) are suited for the in-silico fragmentation and annotation of linear peptides but do not offer the same functionality for cyclic peptides. […]

PMCID: 1933459
PMID: 17676979
DOI: 10.1371/journal.pcbi.0030114

[…] via ms; glycan and lipid analysis; direct profiling of samples by ms, i.e., metabolomics. here masses, not necessarily peptides, are detected in each sample and are comparatively analysed., insilicospectro [] is an open-source perl project that implements many ms-related computations and contains numerous simple examples illustrating some of the presented concepts. two elementary […]

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InSilicoSpectro institution(s)
Upper Austria University of Applied Sciences at Hagenberg, Bioinformatics Department, Hagenberg, Austria

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