InSilicoSpectro statistics

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InSilicoSpectro specifications

Information


Unique identifier OMICS_03358
Name InSilicoSpectro
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for InSilicoSpectro

InSilicoSpectro in publications

 (3)
PMCID: 5919691
PMID: 29659575
DOI: 10.1371/journal.pgen.1007346

[…] 200 bp downstream of tss of the genes in each cluster. the background sequence file was generated by using the computer program ‘fasta-shuffle-notryptic.pl’ in the bioinformatics cpan perl module of insilicospectro-databanks version 0.0.43. the matcompare program in the cread package was used to compute the similarity between the identified dme motif and those in the transfac, jaspar and encode […]

PMCID: 3441486
PMID: 23028676
DOI: 10.1371/journal.pone.0044913

[…] are not necessarily suited for the natural product or synthetic chemist working with cyclic peptides., most of the available tools with a graphical user interface (gui; e.g. proteinprospector , insilicospectro , , proteomics toolkit , peptideart , mmass ) are suited for the in-silico fragmentation and annotation of linear peptides but do not offer the same functionality for cyclic peptides. […]

PMCID: 1933459
PMID: 17676979
DOI: 10.1371/journal.pcbi.0030114

[…] via ms; glycan and lipid analysis; direct profiling of samples by ms, i.e., metabolomics. here masses, not necessarily peptides, are detected in each sample and are comparatively analysed., insilicospectro [] is an open-source perl project that implements many ms-related computations and contains numerous simple examples illustrating some of the presented concepts. two elementary […]


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InSilicoSpectro institution(s)
Upper Austria University of Applied Sciences at Hagenberg, Bioinformatics Department, Hagenberg, Austria

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