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InSNP specifications

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Unique identifier OMICS_10351
Name InSNP
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Windows
Computer skills Medium
Stability No
Maintained No

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Publication for InSNP

InSNP citations

 (5)
library_books

Identification of QTL conferring resistance to stripe rust (Puccinia striiformis f. sp. hordei) and leaf rust (Puccinia hordei) in barley using nested association mapping (NAM)

2018
PMCID: 5784946
PMID: 29370232
DOI: 10.1371/journal.pone.0191666

[…] this interval were pooled into one single parent-specific qtl. subsequently, ‘model-b’ snp effect estimates of all markers within this interval were cumulated for each of the 25 donors, following ∑insnp(donor)i*αi, where (i) iterates through all significant snps (n) in the respective qtl interval. snp (donor)i represents the quantitative ibs donor genotype (i. e. 0 vs. 2) of the ith […]

library_books

Identification and characterization of two functional variants in the human longevity gene FOXO3

2017
PMCID: 5727304
PMID: 29234056
DOI: 10.1038/s41467-017-02183-y

[…] foxo3 region. for the two large exons (exon 3 and exon 4), foxo3-specific long-range products were used as templates. snvs were detected and visualized with the software packages novosnv and insnp. the sequences of all primers used for foxo3 sanger sequencing and the generation of long-range products for exon 3 and exon 4 are listed in supplementary table ., for extensive fine mapping, […]

library_books

A nested association mapping population identifies multiple small effect QTL conferring resistance against net blotch (Pyrenophora teres f. teres) in wild barley

2017
PMCID: 5658061
PMID: 29073176
DOI: 10.1371/journal.pone.0186803

[…] this interval were pooled into one single parent-specific qtl. subsequently ‘model-b’ snp effect estimates of all markers within this interval were cumulated for each of the 25 donors, following ∑insnp(donor)i*αi, where (i) iterates through all significant snps (n) in the respective qtl interval. snp (donor)i represents the quantitative ibs donor genotype (i. e. 0 vs. 2) of the ith […]

library_books

Decoding of Superimposed Traces Produced by Direct Sequencing of Heterozygous Indels

2008
PMCID: 2429969
PMID: 18654614
DOI: 10.1371/journal.pcbi.1000113

[…] user, have been incorporated into several software packages, including polyphred , staden package , codoncode aligner (codoncode corp., dedham, ma, usa), mutation surveyor (softgenetics), novosnp , insnp , polyscan , and autocsa . this approach has been used to detect and characterize sequence variants in clinical applications, such as detecting somatic heterozygous variants in primary cancers […]

library_books

AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes

2007
PMCID: 5947781
PMID: 17485433
DOI: 10.1093/bioinformatics/btm152

[…] to identify sequence variants to a high sensitivity; polyphred () has been available for some time, while comparitive sequence analysis (csa) (), mutation surveyor (softgenetics), novosnp (), insnp () and snpdetector () are more recent developments. in addition, polyphred has been enhanced to detect snps in pcr-amplified diploid samples ()., we have extended some of the concepts of csa […]


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InSNP institution(s)
Institute of Clinical Molecular Biology, Christian-Albrechts-University Kiel, Universitatsklinikum Schleswig-Holstein, Kiel, Germany

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