INTEGRATE-Neo specifications

Unique identifier:
OMICS_14003
Interface:
Command line interface
Input data:
A human reference genome, gene models, gene fusions, high-throughput reference and HLA alleles sequencing reads
Output data:
Gene fusion peptides, HLA alleles
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ, FASTA, GENEPRED, BEDPE
Output format:
TSV, BEDPE
Programming languages:
C++, Python
Version:
1.1.0
Requirements:
BWA, HLAminer, NetMHC

versioning

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INTEGRATE-Neo distribution

download

INTEGRATE-Neo support

Documentation

Maintainer

  • Christopher A. Maher <>

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Publications

Institution(s)

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MI, USA; Department of Internal Medicine, Washington University School of Medicine, St. Louis, MI, USA; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MI, USA; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MI, USA; Department of Medicine, Washington University School of Medicine, St. Louis, MI, USA; Department of Genetics, Washington University School of Medicine, St. Louis, MI, USA; Department of Biomedical Engineering, Washington University, St. Louis, MI, USA

Funding source(s)

This work was supported by an NIH NCI R21CA185983-01, NIH NCI R00CA149182 and a Prostate Cancer Foundation Young Investigator Award.

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