INTEGRATE-Neo specifications

Information


Unique identifier OMICS_14003
Name INTEGRATE-Neo
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A human reference genome, gene models, gene fusions, high-throughput reference and HLA alleles sequencing reads
Input format FASTQ, FASTA, GENEPRED, BEDPE
Output data Gene fusion peptides, HLA alleles
Output format TSV, BEDPE
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, Python
Computer skills Advanced
Version 1.1.0
Stability Stable
Requirements BWA, HLAminer, NetMHC
Maintained Yes

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Maintainer


  • person_outline Christopher A. Maher <>

INTEGRATE-Neo article

INTEGRATE-Neo institution(s)
McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MI, USA; Department of Internal Medicine, Washington University School of Medicine, St. Louis, MI, USA; Siteman Cancer Center, Washington University School of Medicine, St. Louis, MI, USA; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MI, USA; Department of Medicine, Washington University School of Medicine, St. Louis, MI, USA; Department of Genetics, Washington University School of Medicine, St. Louis, MI, USA; Department of Biomedical Engineering, Washington University, St. Louis, MI, USA
INTEGRATE-Neo funding source(s)
This work was supported by an NIH NCI R21CA185983-01, NIH NCI R00CA149182 and a Prostate Cancer Foundation Young Investigator Award.

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