A tool for the analysis and visualization of high-level microarray data from individual or multiple different platforms. Currently, InCroMAP supports mRNA, microRNA, DNA methylation and protein modification datasets. Several methods are offered that allow for an integrated analysis of data from those platforms. The available features of InCroMAP range from visualization of DNA methylation data over annotation of microRNA targets and integrated gene set enrichment analysis to a joint visualization of data from all platforms in the context of metabolic or signalling pathways.

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InCroMAP classification

InCroMAP specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
Java
Version:
InCroMAP version 1.5
Interface:
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Medium
Stability:
Stable

Publications

  • (Eichner et al., 2014) Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software. Journal of chromatography B.
    Published on: 2014 Sep 01
    PMID: 24811976
  • (Wrzodek et al., 2013) InCroMAP: integrated analysis of cross-platform microarray and pathway data. Bioinformatics.
    Published on: 2013 Feb 01
    PMID: 23257199

InCroMAP support

Maintainer

Credits

Institution(s)

Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, 72076 Tübingen, Germany

Funding source(s)

Innovative Medicine Initiative Joint Undertaking (IMI JU) [115001] (MARCAR project)

Link to literature

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