IGB specifications

Information


Unique identifier OMICS_00916
Name IGB
Alternative name Integrated Genome Browser
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License Common Public License Version 1.0
Computer skills Medium
Version 9.0.0
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Integrated_Genome_Browser

Versioning


Add your version

Maintainer


  • person_outline Ann Loraine <>

IGB articles

IGB citations

 (6)
2016
PMCID: 5009733

[…] the highest score and a maximum of two mismatches. read mappings were processed using samtools (24), and coverage graphs were extracted using bedtools (25). coverage graphs were visualized using the integrated genome browser (26). the 5′ sharpness of cosrnas that are positioned at 3′-ends of mitochondrial and plastid transcripts was calculated as the number of nucleotides required to decrease […]

2015
PMCID: 4634765

[…] -r -p 24 -a 95 -l 12—poly_a_clipping –progress) [45]. the coverage per nucleotide was calculated, normalized by the number of total number of mapped of reads for each library and visualized in the integrated genome browser [46]., tsss were predicted by tsspredator [47] which use a ratio-based approach to identify the enriched sites in tex treated samples compared to tex untreated samples. […]

2014
PMCID: 3953431

[…] the total number of mapped reads in the library and then multiplied with the number of mapped reads from the smallest library. mapped unique reads were visualised with the integrated genome browser (igb, version 5.5) (http://bioviz.org/igb/releases.html) [111]., putative orthologous relations between proteins in other leptospira serovars and/or species were determined using blastp alignment […]

2013
PMCID: 3688512

[…] the short read mapper segemehl [70]. based on these read mapping, coverage plots which represent the number of mapped reads per nucleotide were created. those were visualized and examined in the integrated genome browser [71]., we are grateful to nils schürgers (university of freiburg) for help with microarray data normalization. cynthia sharma and jörg vogel (university of würzburg) as well […]

2013
PMCID: 3631235

[…] the results of 3 independent biological experiments., high-density tiling arrays images were normalized and analyzed using the affymetrix tiling analysis software, and were then visualized by the integrated genome browser (affymetrix)., gro experiments were conducted to obtain genome wide transcription rates (tr). gro assays with the yeast cells grown until the exponential phase […]

IGB institution(s)
Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Kannapolis, NC, USA
IGB funding source(s)
Supported by the National Institutes of Health [R01GM103463].

IGB reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review IGB