IMP specifications

Unique identifier:
OMICS_16280
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ
Output format:
HTML
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Name:
Integrated Meta-omic Pipeline
Interface:
Command line interface
Input data:
MG and/or MT FASTQ paired files
Output data:
The HTML reports, augmented VizBin maps, MG- and MT-level functional Krona charts, detailed schematics of the steps carried out within the IMP run, list of parameters and commands, FASTQC report, MetaQUAST report.
Operating system:
Unix/Linux
License:
MIT License
Version:
1.4
Maintained:
Yes

versioning

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IMP distribution

download

IMP support

Documentation

Maintainer

  • Shaman Narayanasamy <>

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Publications

Institution(s)

Luxembourg Centre for Systems Biomedicine, Esch-sur-Alzette, Luxembourg; Institute of Systems Biology, Seattle, WA, USA

Funding source(s)

This work was supported by an ATTRACT program grant (A09/03), a European Union Joint Programming in Neurodegenerative Diseases grant (INTER/JPND/12/01), a proof-of-concept grant (PoC/13/02), an ERASysAPP grant (INTER/8888488), and CORE programme grant (CORE/15/BM/10404093), an Aide à la Formation Recherche (AFR) grant (PHD-2014-1/7934898), and a CORE junior (C15/SR/10404839), all funded by the Luxembourg National Research Fund (FNR).

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