IMSA specifications

Information


Unique identifier OMICS_15201
Name Integrated Metagenomic Sequence Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Takes input sequence from high throughput datasets and utilizes a user-defined host database to filter out host sequence.
Output data Assigns a score to each node of the taxonomy based on read frequency, and can output this as a taxonomy report suitable for cluster analysis or as a taxonomy map (TaxMap). IMSA can also output the specific sequence reads assigned to a taxon of interest for downstream analysis.
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Aleksey Porollo <>

IMSA articles

IMSA institution(s)
Department of Dermatology, University of California San Francisco, San Francisco, CA, USA; Leeds Institute of Molecular Medicine, St James’s University Hospital, Leeds, UK; Department of Electrical Engineering and Computing Systems, University of Cincinnati, Cincinnati, OH, USA; The Center for Autoimmune Genomics and Etiology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA; Division of Biomedical Informatics, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA; Division of Infectious Diseases, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH, USA
IMSA funding source(s)
This work was supported by the National Institutes of Health [5R01HL119190].

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