iPtgxDBs specifications

Information


Unique identifier OMICS_24075
Name Integrated Proteogenomics Databases
Interface Web user interface
Restrictions to use None
Input data Some annotations.
Input format GFF
Output data A minimally redundant, searchable iPtgxDBprotein database, the combined annotations and a detailed matching table.
Output format FASTA+GFF+TSV
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Eubacteria

Maintainer


  • person_outline Christian Ahrens <>

Additional information


https://iptgxdb.expasy.org/

iPtgxDBs article

iPtgxDBs institution(s)
Agroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics & SIB Swiss Institute of Bioinformatics, W├Ądenswil, Switzerland; Department of Health Sciences and Technology, Institute of Molecular Systems Biology, Swiss Federal Institute of Technology Zurich, Zurich, Switzerland; Institute for Molecular Life Sciences & SIB Swiss Institute of Bioinformatics, University of Zurich, Zurich, Switzerland; Biozentrum, University of Basel, Basel, Switzerland; Functional Genomics Center Zurich, ETH & UZH Zurich, Zurich, Switzerland
iPtgxDBs funding source(s)
Supported by the D-HEST BioMedical Proteomics Platform (BMPP), the UO and ARV from the SNSF under grant 31003A-156320.

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